AMBER Archive (2004)

Subject: AMBER: PMEMD COMPILATION REDHAT

From: Obdulia Rabal (mrabal_at_iqs.es)
Date: Thu Mar 11 2004 - 12:36:45 CST

Dear all:

I am trying to compile src.pmemd under RedHat 9.0 with ifc 7.1 compiler.

I have read in a related e-mail
 http://structbio.vanderbilt.edu/archives/amber-archive/2004/0029.phtml)
that
maybe there is a problem with compilation because RedHat 9.0 uses 2.3.2
glibc.

The following message appears when compiling:

/opt/intel/compiler70/ia32/lib/libIEPCF90.a(fstop.o)(.text+0xaa): In
function `libi_exit':
: referencia a `pthread_self' sin definir
/opt/intel/compiler70/ia32/lib/libIEPCF90.a(fstop.o)(.text+0xb6): In
function `libi_exit':
: referencia a `pthread_equal' sin definir
/opt/intel/compiler70/ia32/lib/libIEPCF90.a(threadsafe.o)(.text+0x23): In
function `f_claim_mutex':
: referencia a `pthread_mutex_lock' sin definir
/opt/intel/compiler70/ia32/lib/libIEPCF90.a(threadsafe.o)(.text+0x33): In
function `f_exitthread':
: referencia a `pthread_exit' sin definir
/opt/intel/compiler70/ia32/lib/libIEPCF90.a(threadsafe.o)(.text+0x53): In
function `f_release_mutex':
: referencia a `pthread_mutex_unlock' sin definir
/opt/intel/compiler70/ia32/lib/libIEPCF90.a(f90init.o)(.text+0x1b): In
function `f90_init':
: referencia a `pthread_self' sin definir
/opt/intel/compiler70/ia32/lib/libIEPCF90.a(f90fioerr.o)(.text+0x4d3): In
function `f_f77ioerr':
: referencia a `__ctype_b' sin definir
/opt/intel/compiler70/ia32/lib/libcxa.a(exception.o)(.text+0x7d): In
function `std::set_unexpected(void (*)())':
: referencia a `pthread_mutex_lock' sin definir
/opt/intel/compiler70/ia32/lib/libcxa.a(exception.o)(.text+0x95): In
function `std::set_unexpected(void (*)())':
: referencia a `pthread_mutex_unlock' sin definir
/opt/intel/compiler70/ia32/lib/libcxa.a(exception.o)(.text+0x107): In
function `std::set_terminate(void (*)())':
: referencia a `pthread_mutex_lock' sin definir
......
and so on.

Could anybody help me?

Thanks in advance.
OBdulia Rabal
amber_at_scripps.edu
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