AMBER Archive (2004)

Subject: RE: AMBER: understanding SANDER source code

From: Yong Duan (yduan_at_udel.edu)
Date: Sun Mar 21 2004 - 20:32:03 CST

In those good-old days, this could be achieved relatively easily using
perftrace, flowtrace, and other performance monitoring utility programs
on supercomputers. There is a similar utility program on Linux, called
gprof which might be helpful to you. I must admit that I have not used
gprof myself. But it appears to be an interesting lead.

Good luck!

yong

>
> On Sat, 20 Mar 2004, myang wrote:
>
> > I am trying to understand sander source code line by line,
> and find it's
> > rather frustrating. Can anyone share his/her experience? Or
> where can I find
> > the basic frame, like a flow chart, for sander. Thanks!
> >
> > Best & Regards,
> > Yang
> >
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