AMBER Archive (2004)

Subject: Re: Re: AMBER: segmentation fault when convert pdb to mol2

From: Ye Mei (ymei_at_itcc.nju.edu.cn)
Date: Thu Mar 18 2004 - 18:38:21 CST

That should be the reason. The pdb file contains 8 chains.
The command is "antechamber -fi pdb -fo mol2 -i residue.pdb -o residue.mol2".

Ye

>We would need more information, in particular the command you ran, and the
>pdb file you used. Note that antechamber is designed to deal with _single_
>residues, whereas many pdb files are made up of multiple residues...
>
>...dac
>
>--
>
>==================================================================
>David A. Case | e-mail: case_at_scripps.edu
>Dept. of Molecular Biology, TPC15 | fax: +1-858-784-8896
>The Scripps Research Institute | phone: +1-858-784-9768
>10550 N. Torrey Pines Rd. | home page:
>La Jolla CA 92037 USA | http://www.scripps.edu/case
>==================================================================
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Best regards,
                                 
Ye Mei
ymei_at_itcc.nju.edu.cn
2004-03-19

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