AMBER Archive (2004)

Subject: Re: AMBER: what's the meaning of parameter NRUN

From: David A. Case (
Date: Wed Mar 10 2004 - 00:31:33 CST

On Wed, Mar 10, 2004, scopio wrote:
> I'm using amber6. The tutorial mentioned in my last email indicated in
> the 2nd page that this tutorial is wirtten for amber6 and/or amber7. So
> I'm confused about the description on NRUN.

The amber developers were not involved in creating the tutorial you
mentioned. Our tutorials have their own errors, but the one you found
concerning NRUN is not one of them, as far as I can tell.

> You said 'NRUN is no longer used', but I still can find description on
> NRUN in manual of amber6 and amber7.

In amber 7, nrun applies only to gibbs, not to sander, as is stated
in the manual.



================================================================== David A. Case | e-mail: Dept. of Molecular Biology, TPC15 | fax: +1-858-784-8896 The Scripps Research Institute | phone: +1-858-784-9768 10550 N. Torrey Pines Rd. | home page: La Jolla CA 92037 USA | ================================================================== ----------------------------------------------------------------------- The AMBER Mail Reflector To post, send mail to To unsubscribe, send "unsubscribe amber" to