 | |||||||||||||||
 |
 |
 |
|
 |
|
 |
|
 |
|
 |
|
 |
|
 |
 |
AMBER Archive (2004) - Jan 2004 By Thread
Most recent messages255 messages sorted by: [ author ] [ date ] [ subject ]
About this archive
Starting: Thu Jan 01 2004 - 04:47:18 CST
Ending: Sat Jan 31 2004 - 17:08:57 CST
- Re: AMBER: Antechamber & Ptraj/Rdparm L Jin (Thu Jan 01 2004 - 04:47:18 CST)
- Re: AMBER: Antechamber & Ptraj/Rdparm zhaoxc_at_puccini.che.pitt.edu (Thu Jan 01 2004 - 09:05:31 CST)
- Re: AMBER: Antechamber & Ptraj/Rdparm Bill Ross (Thu Jan 01 2004 - 16:26:55 CST)
- AMBER: Molecular Frame Byungchan Kim (Thu Jan 01 2004 - 21:46:14 CST)
- Re: AMBER: Molecular Frame David A. Case (Fri Jan 02 2004 - 10:22:10 CST)
- Re: AMBER: Molecular Frame Byungchan Kim (Fri Jan 02 2004 - 17:03:36 CST)
- Re: AMBER: Molecular Frame David A. Case (Sat Jan 03 2004 - 09:51:13 CST)
- Re: AMBER: Molecular Frame Bill Ross (Fri Jan 02 2004 - 17:40:54 CST)
- Re: AMBER: Molecular Frame Byungchan Kim (Sat Jan 03 2004 - 13:00:20 CST)
- AMBER: Molecular Frame Byungchan Kim (Thu Jan 01 2004 - 21:46:14 CST)
- AMBER: algorithm used in AMBER A. Hungie (Fri Jan 02 2004 - 04:07:11 CST)
- AMBER: force field A. Hungie (Fri Jan 02 2004 - 06:28:59 CST)
- AMBER: rms in ptraj L Jin (Mon Jan 05 2004 - 08:49:47 CST)
- AMBER: File format generated by respgen Lishan Yao (Mon Jan 05 2004 - 10:50:38 CST)
- AMBER: prep file Youyi Peng (Mon Jan 05 2004 - 17:40:07 CST)
- Re: AMBER: prep file Bill Ross (Mon Jan 05 2004 - 17:49:14 CST)
- AMBER: Radius of gyration Bimo Ario Tejo (Tue Jan 06 2004 - 00:14:37 CST)
- AMBER: Parameters for deuterium Charlie Laughton (Tue Jan 06 2004 - 09:17:46 CST)
- AMBER: Intel Fortran Compiler 8.0 / pmemd 3.1 warning Robert Duke (Tue Jan 06 2004 - 14:20:44 CST)
- Re: AMBER: Intel Fortran Compiler 8.0 / pmemd 3.1 warning Andreas Svrcek-Seiler (Wed Jan 07 2004 - 06:12:30 CST)
- AMBER: Atom type L Jin (Wed Jan 07 2004 - 05:26:25 CST)
- AMBER: strange output of MD L Jin (Wed Jan 07 2004 - 10:42:49 CST)
- Re: AMBER: strange output of MD Rhonda Torres (Wed Jan 07 2004 - 11:48:54 CST)
- Re: AMBER: Atom type Rhonda Torres (Wed Jan 07 2004 - 12:09:17 CST)
- AMBER: .crg file for Delphi a b (Wed Jan 07 2004 - 12:22:34 CST)
- AMBER: modeling GPCR in lipid environment Giulio Rastelli (Thu Jan 08 2004 - 10:49:53 CST)
- AMBER: Minimiation (AMBER5/AMBER7) does not reach the tageted rmsd Anna Schrey (Thu Jan 08 2004 - 04:30:37 CST)
- AMBER: Vlimit problem Yuqin Cai (Thu Jan 08 2004 - 12:15:38 CST)
- AMBER: running on Itanium machines northrop_at_chem.ucla.edu (Thu Jan 08 2004 - 13:14:52 CST)
- AMBER: Amber compilation in IBM-SP4 Jiten (Sat Jan 10 2004 - 02:28:12 CST)
- AMBER: references? a b (Sun Jan 11 2004 - 08:40:50 CST)
- AMBER: Improper dihedral Herbert Georg (Mon Jan 12 2004 - 08:23:22 CST)
- Re: AMBER: Improper dihedral Bill Ross (Mon Jan 12 2004 - 12:21:03 CST)
- AMBER: disulfide bonds Wen Li (Mon Jan 12 2004 - 15:56:26 CST)
- AMBER: error in minimization Itziar Maestre Asenjo (Tue Jan 13 2004 - 09:12:22 CST)
- Re: AMBER: charris5 (Tue Jan 13 2004 - 13:07:33 CST)
- AMBER: LEAP - Error loading units Miguel de Federico (Wed Jan 14 2004 - 11:12:29 CST)
- AMBER: DMF box Stefano.Pieraccini_at_unimi.it (Wed Jan 14 2004 - 10:42:02 CST)
- Re: AMBER: LEAP - Error loading units Bill Ross (Wed Jan 14 2004 - 13:45:19 CST)
- AMBER: "ATTN, need revision" klamothe_at_uiuc.edu (Wed Jan 14 2004 - 14:07:56 CST)
- AMBER: free energy profile calculation Martina Roeselova (Wed Jan 14 2004 - 15:14:48 CST)
- AMBER: NTF L Jin (Fri Jan 16 2004 - 05:15:16 CST)
- AMBER: atom type CM Kristina Furse (Fri Jan 16 2004 - 14:37:38 CST)
- Re: AMBER: atom type CM Bill Ross (Fri Jan 16 2004 - 15:17:29 CST)
- AMBER: GB and Atom Type Steve Seibold (Tue Jan 20 2004 - 09:34:45 CST)
- AMBER: Question for PMEMD users Robert Duke (Tue Jan 20 2004 - 10:05:38 CST)
- AMBER: restraint tang kwa (Tue Jan 20 2004 - 10:10:39 CST)
- AMBER: Parm98 Vs 02 A.Madhumalar (Tue Jan 20 2004 - 10:27:03 CST)
- AMBER: PDB files Beale, John (Tue Jan 20 2004 - 10:43:36 CST)
- AMBER: Do I need to repeat MD simulation? aini_at_UMDNJ.EDU (Tue Jan 20 2004 - 17:43:00 CST)
- AMBER: segmentation fault in Leap Ioana Cozmuta (Tue Jan 20 2004 - 22:39:28 CST)
- Re: AMBER: segmentation fault in Leap Bill Ross (Wed Jan 21 2004 - 03:47:58 CST)
- AMBER: Errors in MM-PBSA??? ML (Wed Jan 21 2004 - 05:46:35 CST)
- AMBER: NMODE via MM-PBSA ML (Wed Jan 21 2004 - 06:03:31 CST)
- AMBER: antechamber and mopac5010mn S. Frank Yan (Wed Jan 21 2004 - 09:37:25 CST)
- AMBER: crystal lattice determination Scott Brozell (Wed Jan 21 2004 - 10:51:37 CST)
- AMBER: oxs g5 machine file Knut Langsetmo (Wed Jan 21 2004 - 14:10:33 CST)
- AMBER: crosslink a residue with a small molecule Eric Hu (Wed Jan 21 2004 - 15:41:08 CST)
- AMBER: prep file for zinc finger Wen Li (Wed Jan 21 2004 - 16:02:54 CST)
- AMBER: remove rotational motion Itziar Maestre Asenjo (Thu Jan 22 2004 - 01:39:15 CST)
- AMBER: How does LEaP place Na+ ions? tang kwa (Thu Jan 22 2004 - 04:10:16 CST)
- AMBER: restrt L Jin (Thu Jan 22 2004 - 05:03:51 CST)
- Re: AMBER: How does LEaP place Na+ ions? Bill Ross (Thu Jan 22 2004 - 11:12:07 CST)
- AMBER: Segmentation fault (core dumped) error of antechamber program S. Frank Yan (Thu Jan 22 2004 - 13:36:54 CST)
- AMBER: oxygen positions around a DNA Ioana Cozmuta (Thu Jan 22 2004 - 20:19:51 CST)
- AMBER: Problem using GLYCAM with sander Itziar Maestre Asenjo (Fri Jan 23 2004 - 11:05:52 CST)
- AMBER: Which program to use to visualize the RESP Outputs derived by AMBER 7 Ilyas Yildirim (Fri Jan 23 2004 - 12:18:23 CST)
- Re: AMBER: Which program to use to visualize the RESP Outputs derived by AMBER 7 Bill Ross (Fri Jan 23 2004 - 13:26:15 CST)
- AMBER: phosphothreonine Youyi Peng (Fri Jan 23 2004 - 16:57:06 CST)
- AMBER: how to correctly change frcmod? opitz_at_che.udel.edu (Fri Jan 23 2004 - 17:05:38 CST)
- AMBER: Fwd: NVE & polarizable force field] Martina Roeselova (Fri Jan 23 2004 - 20:16:32 CST)
- AMBER: Memory for AMBER 6 simulation Sergey (Sat Jan 24 2004 - 03:22:56 CST)
- AMBER: NTR force constant for restraint !! Jiten (Sun Jan 25 2004 - 01:37:09 CST)
- AMBER: Cartitian Restraint Error Jiten (Sun Jan 25 2004 - 08:17:11 CST)
- Re: AMBER: Cartitian Restraint Error Bill Ross (Sun Jan 25 2004 - 13:39:58 CST)
- AMBER: mopac.sh Beale, John (Mon Jan 26 2004 - 08:31:46 CST)
- AMBER: B factors from simulation and from cryst Vlad Cojocaru (Mon Jan 26 2004 - 10:21:50 CST)
- AMBER: B factors --- one more explanation Vlad Cojocaru (Mon Jan 26 2004 - 10:25:47 CST)
- AMBER: installation test question (antechamber, ash) Charles F. Fisher (Mon Jan 26 2004 - 12:16:30 CST)
- AMBER: Suse AMD64 cluster installation Fang, Jianwen (Mon Jan 26 2004 - 12:49:54 CST)
- AMBER: ambpdb in AMBER7 Hong Wu (Mon Jan 26 2004 - 12:52:10 CST)
- Re: AMBER: ambpdb in AMBER7 Bill Ross (Mon Jan 26 2004 - 16:40:12 CST)
- AMBER: Lattice structures in xleap Brandon Tefft (Mon Jan 26 2004 - 23:11:46 CST)
- Re: AMBER: Lattice structures in xleap Bill Ross (Tue Jan 27 2004 - 01:52:38 CST)
- AMBER: trajectory file corruption John (Tue Jan 27 2004 - 05:11:54 CST)
- Re: AMBER: Which program to use to visualize the RESP Outputs FyD (Tue Jan 27 2004 - 10:59:51 CST)
- Re: AMBER: A few questions in the protein unfolding simulations using GB model Bill Ross (Tue Jan 27 2004 - 15:19:10 CST)
- AMBER: A few questions in the protein unfolding simulations using GB model Jiayun Pang (Tue Jan 27 2004 - 14:33:15 CST)
- Re: AMBER: A few questions in the protein unfolding simulations using GB model Bill Ross (Wed Jan 28 2004 - 12:21:10 CST)
- Re: AMBER: A few questions in the protein unfolding simulations using GB model Carlos Simmerling (Wed Jan 28 2004 - 12:26:31 CST)
- Re: AMBER: A few questions in the protein unfolding simulations using GB model Jiayun Pang (Thu Jan 29 2004 - 04:47:52 CST)
- Re: AMBER: A few questions in the protein unfolding simulations using GB model Andy Purkiss (Thu Jan 29 2004 - 08:19:22 CST)
- Re: AMBER: A few questions in the protein unfolding simulations using GB model David A. Case (Thu Jan 29 2004 - 21:59:24 CST)
- Re: AMBER: A few questions in the protein unfolding simulations using GB model Carlos Simmerling (Wed Jan 28 2004 - 12:26:31 CST)
- RE: AMBER: A few questions in the protein unfolding simulations using GB model Bill Ross (Wed Jan 28 2004 - 12:22:55 CST)
- Re: AMBER: A few questions in the protein unfolding simulations using GB model Bill Ross (Wed Jan 28 2004 - 12:21:10 CST)
- AMBER: compilation under fedora core 1 Carsten Detering (Tue Jan 27 2004 - 12:51:26 CST)
- AMBER: SANDER - Abnormal high velocities Miguel de Federico (Wed Jan 28 2004 - 05:16:45 CST)
- AMBER: Normal modes of protein-ligand Martin Lepsik (Wed Jan 28 2004 - 07:43:12 CST)
- AMBER: LES question Lishan Yao (Wed Jan 28 2004 - 12:52:58 CST)
- Re: AMBER: Ibelly and Ewald error message when ewald should be off Scott Brozell (Wed Jan 28 2004 - 23:57:06 CST)
- AMBER: sander and mpich Thomas Exner (Thu Jan 29 2004 - 02:26:55 CST)
- AMBER: CYS, CYX and CYM Nikolai Smolin (Thu Jan 29 2004 - 03:56:09 CST)
- AMBER: ANAL problem. A.B.S.M Osman gani (Thu Jan 29 2004 - 06:24:19 CST)
- AMBER: conversion of amber trajectories to gromos /(xtc) Karin Schleinkofer (Thu Jan 29 2004 - 07:10:28 CST)
- AMBER: XLEAP L Jin (Thu Jan 29 2004 - 08:40:28 CST)
- AMBER: question about LES simulation Vlad Cojocaru (Thu Jan 29 2004 - 10:43:25 CST)
- AMBER: Moil View on Linux Vlad Cojocaru (Thu Jan 29 2004 - 11:13:57 CST)
- AMBER: LES Simulations Vlad Cojocaru (Thu Jan 29 2004 - 11:18:14 CST)
- AMBER: LES error Vlad Cojocaru (Thu Jan 29 2004 - 14:49:49 CST)
- AMBER: (No subject) opitz_at_che.udel.edu (Thu Jan 29 2004 - 16:09:47 CST)
- AMBER: test Vlad Cojocaru (Fri Jan 30 2004 - 07:39:14 CST)
- Re: AMBER: sander and mpich (which compilers/mpich work) Jerry Grooms (Fri Jan 30 2004 - 17:00:22 CST)
- AMBER: sander.LES on IBM SP cluster Vlad Cojocaru (Sat Jan 31 2004 - 04:40:56 CST)
- Re: AMBER: sander.LES on IBM SP cluster Carlos Simmerling (Sat Jan 31 2004 - 08:27:30 CST)
- Re: AMBER: sander.LES on IBM SP cluster Vlad Cojocaru (Sat Jan 31 2004 - 11:18:56 CST)
- AMBER: Installing Amber on IBM AIX cluster Vlad Cojocaru (Sat Jan 31 2004 - 12:50:30 CST)
- Re: AMBER: sander.LES on IBM SP cluster David A. Case (Sat Jan 31 2004 - 13:02:01 CST)
- AMBER: AMBER on IBM SP cluster Vlad Cojocaru (Sat Jan 31 2004 - 13:07:29 CST)
- Re: AMBER: sander.LES on IBM SP cluster Carlos Simmerling (Sat Jan 31 2004 - 13:07:50 CST)
- Re: AMBER: sander.LES on IBM SP cluster Vlad Cojocaru (Sat Jan 31 2004 - 13:20:56 CST)
- Re: AMBER: sander.LES on IBM SP cluster Carlos Simmerling (Sat Jan 31 2004 - 13:29:23 CST)
- Re: AMBER: sander.LES on IBM SP cluster Vlad Cojocaru (Sat Jan 31 2004 - 11:18:56 CST)
- Re: AMBER: sander.LES on IBM SP cluster Carlos Simmerling (Sat Jan 31 2004 - 08:27:30 CST)
- AMBER: Unknown Amber Nomeclature Andrew M K Law (Sat Jan 31 2004 - 16:17:47 CST)
Last message date: Thu May 05 2005 - 14:26:38 CDT
Archived on: Thu May 05 2005 - 14:29:59 CDT
255 messages sorted by: [ author ] [ date ] [ subject ]
About this archive
|
VU Home |
VUMC Home |
People Finder |
University Calendar
webmaster- modified on January 30, 2009 |