AMBER Archive (2004)

Subject: Re: AMBER: trajectory file corruption

From: James W. Caldwell (jimc_at_stanford.edu)
Date: Tue Jan 27 2004 - 12:30:20 CST

Check your input file, it looks like you requested a binary
trajectory file. You can probably still salvage it via ptraj/carnal.

jim

On Tue, 2004-01-27 at 03:11, John wrote:
> Hello All,
>
> I successfully completed a 500ps production MD. The pdb file I created using
> the rst file looks reasonable in VMD. When I tried to use the trajectory
> file VMD could not read the file. After opening it I realised that it has
> been totally corrupted and has nothing to do with a normal molecular
> dynamics trajectory file. Here are some ghastly details of the file: " =@
> 7¿ÐrU0_at_9¡¯p¨XA@~VÌö~B¥Ð:@^Dq>&âÕ2@\0¬^\Sy@@~X^L=ÖåÍ:@~U%~O_ð~K2@Á/~YX®ZA@à<'
> jCM:@~IÒ^"
>
> Any idea what is the cause of this?
>
> Many thanks for your help.
>
> Best wishes,
>
> John
>
>
>
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-- 
James W. Caldwell					650-724-5322
Department of Chemistry
Clark Center, S2.2, Rm S294
Stanford University
Stanford, CA 94305-5447

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