AMBER Archive (2004)

Subject: Re: AMBER: sander.LES on IBM SP cluster

From: David A. Case (
Date: Sat Jan 31 2004 - 13:02:01 CST

On Sat, Jan 31, 2004, Vlad Cojocaru wrote:
> 3.ln -s -f Machines/Machine.ibm_aix MACHINE

I assume that you got this from Carlos Sosa's web page (or the equivalent)?

> 4. make install

There is no point in trying to compile everything; just compile sander.

> But I get the followin error:
> make: 1254-002 Cannot find a rule to create target ../Machines/mpi/t3d.h
> from dependencies.

Do you have the above file (it should be there). What directory were you
in when this error occurred?



================================================================== David A. Case | e-mail: Dept. of Molecular Biology, TPC15 | fax: +1-858-784-8896 The Scripps Research Institute | phone: +1-858-784-9768 10550 N. Torrey Pines Rd. | home page: La Jolla CA 92037 USA | ================================================================== ----------------------------------------------------------------------- The AMBER Mail Reflector To post, send mail to To unsubscribe, send "unsubscribe amber" to