AMBER Archive (2004)

Subject: Re: FW: AMBER: Segmentation fault (core dumped) error of antechamber program

From: David A. Case (case_at_scripps.edu)
Date: Mon Jan 26 2004 - 12:26:38 CST

On Mon, Jan 26, 2004, S. Frank Yan wrote:
>
>
> The compiler is gcc version 3.2.3 20030502, and I used the
> Machine.g77_mpich for compilation. The OS is Red Hat Linux Enterprise
> WS 3.2.3-24. I didn't have mopac installed yet, and couldn't run the
> test suite. Nonetheless, for conversion purpose the antechamber program
> doesn't require a charge model. Also it happens to all the pdb files I
> tested, all of which seem to be OK when visualized. Thanks, Frank

You can test the pdb files in the test suite, e.g.
$AMBERHOME/test/antechamber/tp/tp.pdb. If this works, you can try to see
how/why your pdb files are different, and/or post one of them. If this
also crashes, you may have to use a debugger to get a traceback. Without
being able to reproduce the problem.

..dac 

-- 

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David A. Case                     |  e-mail:      case_at_scripps.edu
Dept. of Molecular Biology, TPC15 |  fax:          +1-858-784-8896
The Scripps Research Institute    |  phone:        +1-858-784-9768
10550 N. Torrey Pines Rd.         |  home page:                   
La Jolla CA 92037  USA            |    http://www.scripps.edu/case
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