AMBER Archive (2004)

Subject: Re: AMBER: A few questions in the protein unfolding simulations using GB model

From: Bill Ross (ross_at_cgl.ucsf.edu)
Date: Tue Jan 27 2004 - 15:19:10 CST

> It took 2.5 days to run a 1 ns simulations to the monomeric structure =
> (164 residues) while it took 12 days to finish a 1 ns run on the dimeric =
> structure. This time difference, I think, is a bit surprising.

What platform were you running on? What else was running during
those times?

Bill Ross

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