AMBER Archive (2004)

Subject: Re: AMBER: ambpdb in AMBER7

From: Hong Wu (hwc8a_at_mizzou.edu)
Date: Mon Jan 26 2004 - 13:14:28 CST

The command I used was:

ambpdb -p filename.prmtop <filename.restrt> filename.pdb

Thank you very much for your help.

Hong

----- Original Message -----
From: "Viktor Hornak" <hornak_at_csb.sunysb.edu>
To: <amber_at_scripps.edu>
Sent: Monday, January 26, 2004 1:05 PM
Subject: Re: AMBER: ambpdb in AMBER7

>
> what was the exact command you used for that? Was it something like this?
>
> ambpdb -p [your topology] < [your restart] > [your pdb]
>
>
> -Viktor
>
> Hong Wu wrote:
>
> > Dear all,
> >
> > I was trying to get a pdb file from my restrt file, however, I got
> > such an error:
> >
> > | New format PARM file being parsed.
> > | Version = 1.000 Date = 01/23/04 Time = 10:15:56
> > fmt: read unexpected character
> > apparent state: unit 5 (unnamed)
> > last format: (6F12.7)
> > lately reading sequential formatted external IO
> > Aborted
> >
> > Has anyone seen this error before? Any comments will be highly
> > appreciated.
> >
> > Hong Wu
> >
> > Department of Chemistry, University of Missouri-Columbia
> >
>
>
> --
> ===================================================================
> Viktor Hornak
> CSB computational facility Phone: (631)632-1439
> SUNY at Stony Brook Fax: (631)632-1555
> Stony Brook, NY 11794-5115 E-mail: viktor.hornak_at_sunysb.edu
> ===================================================================
>
>
>
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