AMBER Archive (2004)

Subject: AMBER: How does LEaP place Na+ ions?

From: tang kwa (
Date: Thu Jan 22 2004 - 04:10:16 CST

Dear All,

TO neutralize the system containing DNA and water,
LEaP module can be used to add Na+ ions. Could anyone
tell me how Na+ ions are placed, at positions of
bisector O1P-P-O2P, or iterative electrostatic
Many thanks inadvance.


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