AMBER Archive (2003) - Jul 2003 By Subject264 messages sorted by:
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Starting: Tue Jul 01 2003 - 02:30:43 CDT
Ending: Thu Jul 31 2003 - 18:45:54 CDT
- (no subject)
- 3 simultaneous simulations in one computer
- about the read error
- Adding missing parameters
- ALAscan of Proline
- AMBER Cutoff
- AMBER question
- Amber7 on Opteron
- AMBER:
- AMBER: (no subject)
- AMBER: /exe/teLeap does not exist
- AMBER: a note on problems with MPI and sander
- AMBER: add
- AMBER: addition to: problem with a small system
- AMBER: AMBER and NAMD
- AMBER: ambpdb and residue number
- AMBER: Big system in Gibbs
- AMBER: chage WATBOX216
- AMBER: chemical potential
- AMBER: combine prep files
- AMBER: compile problem
- AMBER: Coordinate resetting (SHAKE) cannot be accomplished
- AMBER: curves nomenclature
- AMBER: dielectric in sander
- AMBER: Dynamics and Simulated Annealing
- AMBER: dynamics of isolated system
- AMBER: DYNAMICS RUN
- AMBER: Ewald problem
- AMBER: Ewald_Bomb
- AMBER: FILE UNITIO.C
- AMBER: frequency analysis
- AMBER: Fwd: Minimizing after solvation
- AMBER: H-O-H angle in TIP3P water model during minimization
- AMBER: HB dynamics in water and Ion solvation free energies
- AMBER: Impropers from Amber parm files to NAMD
- AMBER: monitor vdw along time
- AMBER: MOPAC509mn test jobs on linux
- AMBER: N/C termini
- AMBER: neutral N- and C- termini !
- AMBER: Non-standard Residue
- AMBER: Odd Problem with PMEMD
- AMBER: parallelisation
- AMBER: please let me know if this is correct
- AMBER: PMEMD and sander from AMBER6 performances
- AMBER: PMF
- AMBER: PMF calculation
- AMBER: question about ptraj
- AMBER: question about ptraj?
- AMBER: Question about quasih analysis
- AMBER: question about quasih?
- AMBER: question on LJ parameters for molecules
- AMBER: Questions about mm_pbsa and alanine scanning
- AMBER: RADII in DELPHI
- AMBER: running AMBER on an IBM P690 cluster
- AMBER: Running Amber on MacOSX(XDarwin)
- AMBER: strange problem with a small system
- AMBER: Taisung Lee/San Diego/Accelrys is out of the office.
- AMBER: TEMP is not reaching 300K
- AMBER: variable not in namelist for Sander input
- AMBER: water box problem
- Antechamber
- Ar as a solvent
- Bad atom type: f
- big changes coming
- carnal in big systems
- Comparative MD
- constraint + restraint
- correction to location of the PMEMD program
- delphi with amber 7
- diffusion in ptraj
- Distribution Min with truncated octahedron box
- effect of forcing neutrality
- How to do a rigid solvent model?
- input problem
- Lennard-Jones A and B coefficients
- Machine file available for ICC compiler ?
- mail reflector address is changing
- May I get your help?
- memory problem
- memory shortage with mm_pbsa
- memory shortage with mm_pbsa - some more thoughts
- methylphosphonate
- nab compilation
- New program available: PMEMD (Particle Mesh Ewald Molecular Dynamics)
- Nmanal
- Nmode doesn't work ?
- Nmode recompilation
- Nmode recompilation)
- npscal
- ntx in sander
- Opteron Experience
- parallel version amber installation problem
- parallelisation
- PMF
- protonate
- ptraj
- Questions about output archive and micromolecules
- Refining a docked protein complex
- resp for charged molecule?
- sander,ntt=5
- Sander_classic output: NAN
- Strange F.E.P. behavior
- Temperature control
- Valdiation of Latest Amber parameters
- van der Waals term
- vlimit exceeded
- VXllig Legal geld Verdienen Ohne Risiko!
- your mail
- your mail (IBM runtime problem)
Last message date: Fri Feb 06 2004 - 10:15:04 CST
Archived on: Thu May 05 2005 - 14:17:44 CDT
264 messages sorted by:
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