AMBER Archive (2003)

Subject: AMBER question

From: David (p9690409_at_dec4000.cc.ncku.edu.tw)
Date: Fri Jul 11 2003 - 08:42:12 CDT

Dear AMBER reflector:

Hello, I am a graduate student from Taiwan. I sent AMBER question before.

When I calculate amino acid residue, I have AMBER force field questions as
below:

1. In AMBER electrostatic energy term, how to get the value of dielectric
constant and point charges ?

2. How to define the Rij in electristatic energy term, and how to get its
value ?

Wish you can give me some suggestions. Be very grateful to you!

Best Regards.

David