AMBER Archive (2003)

Subject: Re: AMBER: Non-standard Residue

From: Ran Ye (ryejob_at_yahoo.com)
Date: Wed Jul 23 2003 - 11:08:03 CDT

Here's the address of my 1CAG-am.pdb file:

http://www.cs.colostate.edu/~ye/1CAG-am.pdb.txt

Thanks for your help!

--- "David A. Case" <case_at_scripps.edu> wrote:
> On Tue, Jul 22, 2003, Ran Ye wrote:
>
> > cobre07 9% antechamber -fi pdb -fo gzmat -i
> > 1CAG-am.pdb -o 1CAG-am.gau
> >
> > Unrecognized atomic name , exitBus error
> (core dumped)
>
> We need to see what is in the 1CAG-am.pdb file.
> Antechamber is not all that
> robust in handling bad input, but somehow it thinks
> you have a blank atom
> name....you could look at your pdb file to see if
> anything is funny; otherwise
> you will have to post it.
>
> ..regards...dac
>
> --
>
>
==================================================================
> David A. Case | e-mail:
> case_at_scripps.edu
> Dept. of Molecular Biology, TPC15 | fax:
> +1-858-784-8896
> The Scripps Research Institute | phone:
> +1-858-784-9768
> 10550 N. Torrey Pines Rd. | home page:
>
> La Jolla CA 92037 USA |
> http://www.scripps.edu/case
>
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