AMBER Archive (2003)

Subject: parallelisation

From: gold gunaseelan (gold_smith_at_rediffmail.com)
Date: Mon Jul 07 2003 - 08:32:00 CDT

  respected sir,
i have promblem in parallelising amber6.
we have linux cluster consisting of five nodes. we used redhat
linux 7.3 and mpich 1.2.5. we want to run parallel version
of amber6 program on the cluster. so, we have created a user area
with name 'programs' in all nodes and installed the
amber program and mpich. when we try to test run the program
(sander) on all five processors,the program runs only on one
node (splitting in to 5) ie., the other four nodes are not
recogniszed. I dont know where the promblem is .kindly suggest
remedy.thanking u in advance -goldsmith
emil:gold_smith_at_rediffmail.com

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