AMBER Archive (2001) - Apr 2001 By Date

Starting: Mon Apr 02 2001 - 04:33:38 CDT
Ending: Mon Apr 30 2001 - 12:05:37 CDT

• (no subject) Michal Otyepka (Mon Apr 02 2001 - 04:33:38 CDT)
• about OWFEG nicolas baurin (Mon Apr 02 2001 - 04:36:11 CDT)
• about dials_and_windows thenmalar rathinavelan (Mon Apr 02 2001 - 07:13:41 CDT)
• about dials_and_windows thenmalar rathinavelan (Mon Apr 02 2001 - 07:13:41 CDT)
• terminal base pair opening Peter Varnai (Mon Apr 02 2001 - 07:19:54 CDT)
• pressure with polarizable potentials Pavel Jungwirth (Mon Apr 02 2001 - 07:21:26 CDT)
• FW: about Owfeg in Amber 6.0 Craig Marhefka (Mon Apr 02 2001 - 08:19:18 CDT)
• RE: terminal base pair opening Guanglei Cui (Mon Apr 02 2001 - 08:27:19 CDT)
• RE: about dials_and_windows Guanglei Cui (Mon Apr 02 2001 - 08:34:24 CDT)
• terminal base pair opening 2 Peter Varnai (Mon Apr 02 2001 - 08:46:06 CDT)
• setting random velocities Svetlana Nolde (Mon Apr 02 2001 - 11:17:01 CDT)
• (no subject) Bill Ross  (Mon Apr 02 2001 - 11:51:45 CDT)
• RE: terminal base pair opening Bill Ross  (Mon Apr 02 2001 - 12:18:38 CDT)
• Ca2+ parameters and how ? ... A. Ababou (Mon Apr 02 2001 - 14:46:27 CDT)
• saving a trajectory as individual pdb files Jake Isaacs (Mon Apr 02 2001 - 16:42:38 CDT)
• Re: pressure with polarizable potentials jim caldwell (Mon Apr 02 2001 - 16:51:10 CDT)
• RE: saving a trajectory as individual pdb files Guanglei Cui (Mon Apr 02 2001 - 17:23:51 CDT)
• Re: saving a trajectory as individual pdb files Bill Ross  (Mon Apr 02 2001 - 17:29:07 CDT)
• Re: saving a trajectory as individual pdb files Jarrod Smith (Mon Apr 02 2001 - 17:39:15 CDT)
• Re: Ca2+ parameters and how ? ... Bill Ross  (Mon Apr 02 2001 - 17:54:54 CDT)
• producing a post-ptraj prmtop R. M. Fesinmeyer (Tue Apr 03 2001 - 19:20:41 CDT)
• RE: producing a post-ptraj prmtop Guanglei Cui (Tue Apr 03 2001 - 20:13:27 CDT)
• Pairlist error Troy Bothwell (Tue Apr 03 2001 - 22:20:35 CDT)
• Re: Pairlist error Bill Ross  (Tue Apr 03 2001 - 23:23:29 CDT)
• Re: Pairlist error jim caldwell (Tue Apr 03 2001 - 23:44:54 CDT)
• Re: producing a post-ptraj prmtop Peter Varnai (Wed Apr 04 2001 - 03:44:26 CDT)
• OCCO in parm99 Peter Varnai (Wed Apr 04 2001 - 03:52:32 CDT)
• creating a restrt file from frames of mdcrd and mdvel Jake Isaacs (Wed Apr 04 2001 - 09:31:35 CDT)
• sander_classic: bellyrun with constraints nicolas baurin (Wed Apr 04 2001 - 13:13:21 CDT)
• Following Coordinates Troy Bothwell (Wed Apr 04 2001 - 18:23:16 CDT)
• Re: Following Coordinates Bill Ross  (Wed Apr 04 2001 - 19:24:54 CDT)
• Box info after minimization Troy Bothwell (Wed Apr 04 2001 - 22:38:58 CDT)
• Blowup problem txyang (Thu Apr 05 2001 - 02:12:45 CDT)
• Re: sander_classic: bellyrun with constraints nicolas baurin (Thu Apr 05 2001 - 02:12:51 CDT)
• structure verification Christian Pilger (Thu Apr 05 2001 - 08:22:29 CDT)
• RDF figure txyang (Fri Apr 06 2001 - 02:19:20 CDT)
• AMBER6/PME on Origin 2000 Didier Rognan (Fri Apr 06 2001 - 06:43:43 CDT)
• AMBER 6 on PME Didier Rognan (Fri Apr 06 2001 - 11:41:19 CDT)
• Re: AMBER 6 on PME Jarrod Smith (Fri Apr 06 2001 - 13:07:57 CDT)
• Re: opinions on supercomputer platforms Nathalie Godbout (Fri Apr 06 2001 - 14:57:37 CDT)
• ask help Yang Tom (Sun Apr 08 2001 - 02:40:01 CDT)
• GB and Ions Andreas Svrcek-Seiler (Mon Apr 09 2001 - 05:21:06 CDT)
• sander compilers Andrew Petersen (Mon Apr 09 2001 - 09:21:55 CDT)
• electrostatic point charge Olga Carvalho (Mon Apr 09 2001 - 09:45:19 CDT)
• Re: sander compilers David Konerding (Mon Apr 09 2001 - 11:13:23 CDT)
• internal variables in ptraj Therese Malliavin (Tue Apr 10 2001 - 03:29:44 CDT)
• TIP3P/SPC VdW radius artem (Tue Apr 10 2001 - 11:00:18 CDT)
• minimization Andrew Aird (Tue Apr 10 2001 - 11:05:27 CDT)
• Delphi Calculations Guanglei Cui (Tue Apr 10 2001 - 14:15:01 CDT)
• Re: TIP3P/SPC VdW radius Thomas Huber (Tue Apr 10 2001 - 15:02:43 CDT)
• Re: TIP3P/SPC VdW radius Jung-Hsing Lin (Tue Apr 10 2001 - 15:43:52 CDT)
• Re: TIP3P/SPC VdW radius Mihaly Mezei (Tue Apr 10 2001 - 16:01:35 CDT)
• water density and rdf calculations thenmalar rathinavelan (Wed Apr 11 2001 - 05:02:59 CDT)
• N-terminal and C-terminal hydrogens Troy Bothwell (Thu Apr 12 2001 - 13:10:16 CDT)
• Re: N-terminal and C-terminal hydrogens Michael Cooney (Thu Apr 12 2001 - 15:55:06 CDT)
• AMBER vdW Ryan H. Lilien (Fri Apr 13 2001 - 08:41:59 CDT)
• odd display of ambpdb generated files Jake Isaacs (Fri Apr 13 2001 - 15:20:39 CDT)
• Re: odd display of ambpdb generated files Bill Ross  (Fri Apr 13 2001 - 17:12:45 CDT)
• RE: odd display of ambpdb generated files Troy Bothwell (Fri Apr 13 2001 - 19:02:26 CDT)
• isotropic scaling of coordinates during MD Giulio Rastelli (Sat Apr 14 2001 - 06:35:48 CDT)
• Compilation problem of AMBER6.0! Ireena Bagai (Mon Apr 16 2001 - 07:24:25 CDT)
• Re: Compilation problem of AMBER6.0! Carlos Simmerling (Mon Apr 16 2001 - 09:01:06 CDT)
• Re: odd display of ambpdb generated files Elsa Sousa Henriques (Mon Apr 16 2001 - 12:49:03 CDT)
• Windows version of AMBER? Stan (Tue Apr 17 2001 - 01:59:44 CDT)
• Re: Compilation problem of AMBER6.0! Stephane (Tue Apr 17 2001 - 04:46:44 CDT)
• Re: odd display of ambpdb generated files Richard W Dixon (Tue Apr 17 2001 - 08:26:45 CDT)
• Re: odd display of ambpdb generated files Bill Ross  (Tue Apr 17 2001 - 10:42:26 CDT)
• Re: odd display of ambpdb generated files Mark Forster (Tue Apr 17 2001 - 10:58:49 CDT)
• atom types for xleap Marcela Madrid (Tue Apr 17 2001 - 11:08:59 CDT)
• Re: odd display of ambpdb generated files David Case (Tue Apr 17 2001 - 11:27:19 CDT)
• Re: odd display of ambpdb generated files Michael Cooney (Tue Apr 17 2001 - 11:56:36 CDT)
• RE: Windows version of AMBER? Ostlund, Neil S. (Tue Apr 17 2001 - 12:04:04 CDT)
• Re: odd display of ambpdb generated files Bill Ross  (Tue Apr 17 2001 - 13:20:18 CDT)
• Re: atom types for xleap Bill Ross  (Tue Apr 17 2001 - 13:23:37 CDT)
• Re: odd display of ambpdb generated files Mihaly Mezei (Tue Apr 17 2001 - 14:18:03 CDT)
• Re: odd display of ambpdb generated files Bill Ross  (Tue Apr 17 2001 - 14:22:19 CDT)
• Re: odd display of ambpdb generated files David Case (Tue Apr 17 2001 - 14:33:16 CDT)
• 1-4 nonbonded interactions David L. Bostick (Wed Apr 18 2001 - 13:37:12 CDT)
• ISTAR2 and 64-bit sander Jarrod Smith (Wed Apr 18 2001 - 14:20:05 CDT)
• Re: 1-4 nonbonded interactions Bill Ross  (Wed Apr 18 2001 - 14:58:59 CDT)
• Re: ISTAR2 and 64-bit sander jim caldwell (Wed Apr 18 2001 - 15:26:42 CDT)
• Problem in adding solvent other than water ... Mausumi Mazumdar (Wed Apr 18 2001 - 23:56:42 CDT)
• Amber 6 on parallel SUN Christian Pilger (Thu Apr 19 2001 - 04:47:02 CDT)
• Test run for gb_rna on AMBER6 (IBM SP3) Sanjeev B.S. (Thu Apr 19 2001 - 14:54:57 CDT)
• Where to Start working in AMBER from? Ireena Bagai (Fri Apr 20 2001 - 08:07:23 CDT)
• tleap but no xleap on IBM SP3 Sanjeev B.S. (Fri Apr 20 2001 - 09:44:04 CDT)
• ptraj correlation command Troy Bothwell (Sat Apr 21 2001 - 09:23:40 CDT)
• test run Sanjeev B.S. (Sat Apr 21 2001 - 16:24:25 CDT)
• amber-request@cgl.ucsf.edu k. vengadesan (Sat Apr 21 2001 - 21:57:24 CDT)
• Model(l)ing 2001 in Erlangen/Germany: Speaker list Harald Lanig (Mon Apr 23 2001 - 07:59:29 CDT)
• problem with carnal on linux Riccardo Nifosi (Mon Apr 23 2001 - 10:03:40 CDT)
• Problem, setting up AMBERHOME! Ireena Bagai (Tue Apr 24 2001 - 05:42:04 CDT)
• RE: Problem, setting up AMBERHOME! Thomas A. Spraggins (Tue Apr 24 2001 - 07:23:48 CDT)
• Re: Problem, setting up AMBERHOME! Andrea Bernini (Tue Apr 24 2001 - 09:08:08 CDT)
• Re: Problem, setting up AMBERHOME! jim caldwell (Tue Apr 24 2001 - 10:04:42 CDT)
• How to let IBELLY and NTR both on? Hai Long (Tue Apr 24 2001 - 11:10:49 CDT)
• create a parm.top file Pascal Bonnet (Tue Apr 24 2001 - 12:18:51 CDT)
• Request. hparikh (Tue Apr 24 2001 - 16:12:52 CDT)
• sander on SP3 Sanjeev B.S. (Tue Apr 24 2001 - 16:59:16 CDT)
• Sander minimization kian kani (Tue Apr 24 2001 - 20:50:44 CDT)
• Re: How to let IBELLY and NTR both on? Svetlana Nolde (Wed Apr 25 2001 - 04:55:32 CDT)
• special belly minimization Didier Rognan (Wed Apr 25 2001 - 05:40:51 CDT)
• AMBER on LINUX Osvaldo Andrade Santos Filho (Wed Apr 25 2001 - 14:30:05 CDT)
• Essential dynamics David Bevan (Thu Apr 26 2001 - 06:18:25 CDT)
• Re: applying atom types Bill Ross  (Fri Apr 27 2001 - 12:24:19 CDT)
• about plevel in sander 6 Shixiang Yan (Fri Apr 27 2001 - 17:32:48 CDT)
• AMBER6 on Alphas40 Sanjeev B.S. (Sat Apr 28 2001 - 03:06:22 CDT)
• Re: AMBER6 on Alphas40 (fwd) Sanjeev B.S. (Mon Apr 30 2001 - 02:31:14 CDT)
• sander crash / linux cluster C. Klein (Mon Apr 30 2001 - 10:06:58 CDT)
• Re: AMBER6 on Alphas40 (fwd) Jarrod Smith (Mon Apr 30 2001 - 11:11:34 CDT)
• Re: AMBER6 on Alphas40 (fwd) Michael Crowley (Mon Apr 30 2001 - 11:35:36 CDT)
• Re: AMBER6 on Alphas40 (fwd) Thomas Cheatham (Mon Apr 30 2001 - 12:05:37 CDT)

Last message date: Sun Dec 30 2001 - 21:24:17 CST
Archived on: Thu May 05 2005 - 14:17:15 CDT