AMBER Archive (2000) - Aug 2000 By Thread

Starting: Tue Aug 01 2000 - 18:44:44 CDT
Ending: Thu Aug 31 2000 - 17:23:24 CDT

• Re: Periodic Boundary Condition Kouji Hayama (Thu Aug 24 2000 - 02:09:40 CDT)
• Ca2+ parameters Jarrod Smith (Tue Aug 01 2000 - 18:44:44 CDT)
  • Re: Ca2+ parameters Kouji Hayama (Wed Aug 02 2000 - 01:20:06 CDT)
• animation of normal modes Scott Boesch (Thu Aug 03 2000 - 15:26:34 CDT)
• Re: How to make pdb"q" files easily? Bill Ross (Fri Aug 04 2000 - 12:33:58 CDT)
• Profec wentaofu (Fri Aug 04 2000 - 13:17:56 CDT)
• a question about the setting to contrain kinetic energy Margaret Cheung (Sun Aug 06 2000 - 01:04:43 CDT)
• ChemInt2000 hotel rooms Steve Heller (Sun Aug 06 2000 - 16:59:49 CDT)
• isoxazole force constants Eric Hu (Mon Aug 07 2000 - 14:30:11 CDT)
• Did MM/PBSA runs on linux also? Lawrence Tsang (Mon Aug 07 2000 - 23:42:39 CDT)
• Where to download mm5_car1.Z for example1 of mmpbsa? Lawrence Tsang (Mon Aug 07 2000 - 23:59:34 CDT)
• Ph.D. thesis in Strasbourg-France Didier Rognan (Tue Aug 08 2000 - 04:11:10 CDT)
• Myrinet + Beowulf for AMBER? Jarrod Smith (Tue Aug 08 2000 - 09:19:54 CDT)
  • RE: Myrinet + Beowulf for AMBER? Kouji Hayama (Wed Aug 09 2000 - 00:11:41 CDT)
• urgent sohail qamar (Tue Aug 08 2000 - 09:21:16 CDT)
• charges for new compound Marcela Madrid (Tue Aug 08 2000 - 10:03:54 CDT)
• Re: Amber6 on a ES40/4CPUs jim caldwell (Tue Aug 08 2000 - 10:20:49 CDT)
• Problem with PME test Jithesh P.V (Thu Aug 10 2000 - 07:01:55 CDT)
  • Re: Problem with PME test Jithesh P.V (Fri Aug 11 2000 - 11:04:02 CDT)
  • Re: Problem with PME test Michael Crowley (Fri Aug 11 2000 - 14:02:56 CDT)
• new book Boyd (Thu Aug 10 2000 - 13:00:13 CDT)
• MM-PBSA trajectory file samantha hughes (Fri Aug 11 2000 - 09:28:48 CDT)
• reassigning temp. during MD Raik Gruenberg (Fri Aug 11 2000 - 10:03:06 CDT)
  • Re: reassigning temp. during MD Robert Matthew Fesinmeyer (Mon Aug 21 2000 - 17:20:53 CDT)
    • Re: reassigning temp. during MD Carlos Simmerling (Wed Aug 23 2000 - 11:41:17 CDT)
• compiling AMBER5.0 on Beowolf cluster Andrew Petersen (Fri Aug 11 2000 - 15:39:43 CDT)
  • Re: compiling AMBER5.0 on Beowolf cluster Juergen Suehnel (Sat Aug 12 2000 - 05:52:27 CDT)
• analysis tool for water and stacking? Frank Yan (Fri Aug 11 2000 - 17:40:32 CDT)
• MACHINE file for DEC Alpha! Jennifer Bui (Tue Aug 15 2000 - 02:40:55 CDT)
  • Re: MACHINE file for DEC Alpha! Thomas A. Spraggins (Tue Aug 15 2000 - 06:59:51 CDT)
  • Re: MACHINE file for DEC Alpha! jim caldwell (Tue Aug 15 2000 - 09:30:21 CDT)
• PME with charged system Marcela Madrid (Tue Aug 15 2000 - 09:31:04 CDT)
  • Re: PME with charged system David Small (Tue Aug 15 2000 - 21:17:45 CDT)
  • Re: PME with charged system darden (Fri Aug 18 2000 - 23:52:26 CDT)
• need help nurindah wulandari (Tue Aug 15 2000 - 09:43:48 CDT)
• Re: two questions: (1)dihedral, (2) movies Carlos Simmerling (Tue Aug 15 2000 - 10:15:45 CDT)
  • Re: two questions: (1)dihedral, (2) movies Frank Yan (Tue Aug 15 2000 - 10:47:59 CDT)
  • Re: two questions: (1)dihedral, (2) movies samantha hughes (Tue Aug 15 2000 - 11:12:41 CDT)
• vdw parameter Todd J. Minehardt (Tue Aug 15 2000 - 11:44:50 CDT)
• Annealing with rigid body Pornthep Sompornpisut (Tue Aug 15 2000 - 14:29:34 CDT)
• AMBER installation Dayle Smith (Wed Aug 16 2000 - 13:55:27 CDT)
• NAD parameters Raphael Buencamino (Wed Aug 16 2000 - 19:46:37 CDT)
• cobalt DOIZI Denis 98775 (Thu Aug 17 2000 - 02:31:43 CDT)
• dielectric constant David Small (Thu Aug 17 2000 - 14:10:25 CDT)
  • Re: dielectric constant Soaring Bear (Sat Aug 19 2000 - 10:03:43 CDT)
• AMBER 5.01 on Linux Ramon Garduno (Fri Aug 18 2000 - 13:53:56 CDT)
  • Oct box and ptraj Robert Matthew Fesinmeyer (Mon Aug 21 2000 - 13:12:50 CDT)
  • Re: AMBER 5.01 on Linux Ramon Garduno (Thu Aug 24 2000 - 15:02:49 CDT)
• processing of carnal output Michal Otyepka (Tue Aug 22 2000 - 05:23:06 CDT)
• how to justify the size of a periodic box. Margaret Cheung (Tue Aug 22 2000 - 18:47:41 CDT)
• MDEN output file format Fabrice YERLY (Wed Aug 23 2000 - 05:14:01 CDT)
• sysdir Nelson Teixeira Brito (Wed Aug 23 2000 - 10:20:00 CDT)
  • Re: sysdir jim caldwell (Wed Aug 23 2000 - 12:30:22 CDT)
  • Re: sysdir Chuck Schneider (Wed Aug 23 2000 - 13:01:07 CDT)
  • Re: sysdir Nelson Teixeira Brito (Thu Aug 24 2000 - 04:05:02 CDT)
• shared mem David Small (Wed Aug 23 2000 - 17:03:40 CDT)
  • Parm99 Jie Guo (Thu Aug 24 2000 - 11:03:21 CDT)
• anal.in format J. Bryan Buckalew (Thu Aug 24 2000 - 10:52:21 CDT)
• absoft and AMBER6 Jarrod Smith (Thu Aug 24 2000 - 21:33:00 CDT)
• minimization from the average structure of MD simulation Minmin Wang (Tue Aug 29 2000 - 11:25:01 CDT)
• Re: Questions on the definition of parameters jim caldwell (Tue Aug 29 2000 - 14:57:57 CDT)
• Brief courses on AMBER 6 Michael Cooney (Wed Aug 30 2000 - 10:54:37 CDT)
  • Re: Brief courses on AMBER 6 David Case (Wed Aug 30 2000 - 11:48:16 CDT)
    • Re: Brief courses on AMBER 6 Jarrod Smith (Wed Aug 30 2000 - 12:24:20 CDT)
• "Protonate" errors Michael Cooney (Wed Aug 30 2000 - 13:40:53 CDT)
• Benchmarking AMD CPUS Yongxing Liu (Thu Aug 31 2000 - 05:14:36 CDT)
• rdparm/ptraj Tuomo Laitinen (Thu Aug 31 2000 - 07:50:59 CDT)
  • Re: rdparm/ptraj Thomas E. Cheatham, III (Thu Aug 31 2000 - 13:03:07 CDT)
• manganese ions Natasja Brooijmans (Thu Aug 31 2000 - 17:23:24 CDT)

Last message date: Sat Dec 30 2000 - 23:44:00 CST
Archived on: Thu May 05 2005 - 14:17:08 CDT