AMBER Archive (2000)

Subject: Re: Amber6 on a ES40/4CPUs

From: jim caldwell (caldwell_at_heimdal.compchem.ucsf.edu)
Date: Tue Aug 08 2000 - 10:20:49 CDT


Looks to me like you need to either 1) reduce the dimensions
set in the sizes.h file or 2) rebuild the kernel to allow
bigger process data sizes.

jim

On Tue, 8 Aug 2000, Osmar Norberto de Souza wrote:

> Hello AMBER Users,
> I have tried to compile parallel sander_classic of AMBER6 on a
> COMPAQ ES40 server running Tru64 Unix.
> I get an executable but when I try to run a MD job I get the
> following error message:
>
> 4958:/usr/users/osmarns/AMBER6/src/sander_classic/sander_classic:
> /sbin/loader: Fatal Error: Program datasize exceeds process datasize
> limit.
>
> 4565:/usr/users/osmarns/AMBER6/src/sander_classic/sander_classic:
> /sbin/loader: Fatal Error: Program datasize exceeds process datasize
> limit.
>
> 5234:/usr/users/osmarns/AMBER6/src/sander_classic/sander_classic:
> /sbin/loader: Fatal Error: Program datasize exceeds process datasize
> limit.
>
> 5019:/usr/users/osmarns/AMBER6/src/sander_classic/sander_classic:
> /sbin/loader: Fatal Error: Program datasize exceeds process datasize
> limit.
>
> Any comments or suggestion are most welcome.
>
> Best regards,
> Osmar
>
> -----------------------------------------------------------
> Osmar NORBERTO DE SOUZA, Ph.D.
> Group Leader: Modelagem Molecular & Simulação
> Centro de Biologia Molecular Estrutural
> Laboratório Nacional de Luz Síncrotron (LNLS)
> P.O. Box 6192
> Campinas 13087-970, São Paulo
> Brasil
> -----------------------------------------------------------
> Tel: +55 19 287-4520
> Fax: +55 19 287-7110
> E-mail: osmarns_at_lnls.br
> http://www.lnls.br
> -----------------------------------------------------------
>
>
>

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James W. Caldwell (voice) 415-476-8603
Department of Pharmaceutical Chemistry (fax) 415-502-1411
Mail Stop 0446 (email) caldwell_at_heimdal.ucsf.edu
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University of California
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