 | |||||||||||||||
 |
 |
 |
|
 |
|
 |
|
 |
|
 |
|
 |
|
 |
 |
AMBER Archive (2005) - Dec 2005 By Thread
Most recent messages228 messages sorted by: [ author ] [ date ] [ subject ]
About this archive
Starting: Thu Dec 01 2005 - 01:06:49 CST
Ending: Sat Dec 31 2005 - 12:24:30 CST
- Re: AMBER: Using OPLS atom types David A. Case (Fri Dec 02 2005 - 22:01:17 CST)
- Re: AMBER: Using OPLS atom types Bill Ross (Sat Dec 03 2005 - 12:15:53 CST)
- AMBER: Creating an Ester with Antechamber/Gaff John O'Mahony (Thu Dec 01 2005 - 03:46:40 CST)
- AMBER: regarding ambpdb S.Sundar Raman (Thu Dec 01 2005 - 04:40:58 CST)
- AMBER: MD without a thermostat Vlad Cojocaru (Thu Dec 01 2005 - 09:32:57 CST)
- AMBER: no thermostat versus very weak thermostat Vlad Cojocaru (Thu Dec 01 2005 - 09:57:15 CST)
- AMBER: Some explanations of MM_PBSA @DECOMP OUTPUT file? Peng Tao (Thu Dec 01 2005 - 10:35:09 CST)
- AMBER: Mg2+ issues of using MM-PB/GBSA mingche Pan (Thu Dec 01 2005 - 13:01:24 CST)
- Re: AMBER: Mg2+ issues of using MM-PB/GBSA Carlos Simmerling (Thu Dec 01 2005 - 13:26:11 CST)
- Re: AMBER: Mg2+ issues of using MM-PB/GBSA David A. Case (Thu Dec 01 2005 - 13:47:20 CST)
- Re: AMBER: Mg2+ issues of using MM-PB/GBSA Thomas Cheatham (Thu Dec 01 2005 - 23:27:21 CST)
- Re: AMBER: Mg2+ issues of using MM-PB/GBSA mingche Pan (Fri Dec 02 2005 - 10:32:15 CST)
- Re: AMBER: Mg2+ issues of using MM-PB/GBSA mingche Pan (Fri Dec 02 2005 - 12:09:28 CST)
- Re: AMBER: Mg2+ issues of using MM-PB/GBSA. . Don.Bashford_at_stjude.org (Mon Dec 05 2005 - 12:09:20 CST)
- AMBER: Radial Distribution functions by ptraj Priti Hansia (Thu Dec 01 2005 - 13:44:02 CST)
- AMBER: Position restraints and Models Steve Seibold (Thu Dec 01 2005 - 14:54:06 CST)
- AMBER: Questions about MM-PBSA in Amber8 zgleo (Thu Dec 01 2005 - 23:04:26 CST)
- AMBER: Problem in running AMBER 7 in solaris ! Pradipta Bandyopadhyay (Fri Dec 02 2005 - 03:17:19 CST)
- AMBER: Problem with sander test suites in solaris ! Pradipta Bandyopadhyay (Fri Dec 02 2005 - 08:26:05 CST)
- AMBER: ptraj crash error Simon Whitehead (Fri Dec 02 2005 - 11:51:47 CST)
- AMBER: rotational motion in periodic simulation Douali, Latifa (Fri Dec 02 2005 - 12:50:28 CST)
- AMBER: Replica-Exchange MD from AMBER8! Peng Tao (Fri Dec 02 2005 - 16:28:27 CST)
- AMBER: ERROR in readParm: ...failed to find BONDS_WITHOUT_HYDROGEN Rhoad, Jonathan S. (Fri Dec 02 2005 - 17:02:36 CST)
- AMBER: parmchk bug fix David A. Case (Fri Dec 02 2005 - 22:22:21 CST)
- AMBER: parmchk bug fix, with attachment David A. Case (Fri Dec 02 2005 - 22:33:20 CST)
- AMBER: Alignment tensor and Interia tensor RadhaKumari Yadav (Sat Dec 03 2005 - 10:58:01 CST)
- AMBER: The error during calculating PB with pbsa zhli_2000_at_126.com (Sun Dec 04 2005 - 22:39:19 CST)
- AMBER: RMSD Calculations Kara Di Giorgio (Mon Dec 05 2005 - 09:22:03 CST)
- AMBER: RESP: Question Carlos Jaime (Mon Dec 05 2005 - 11:43:16 CST)
- AMBER: 6-thioguanine E.A.Moore (Tue Dec 06 2005 - 08:31:59 CST)
- AMBER: MM_PBSA parameters Nelson Fonseca (Tue Dec 06 2005 - 09:26:55 CST)
- AMBER: hi Germán Sciaini (Wed Dec 07 2005 - 04:51:06 CST)
- AMBER: about resp JAVIER PEREZ (Wed Dec 07 2005 - 06:12:48 CST)
- AMBER: Relax in tLEaP ? FyD (Wed Dec 07 2005 - 08:00:38 CST)
- AMBER: Clustering - MMTSB Toolkit kclust kkirschn_at_hamilton.edu (Wed Dec 07 2005 - 12:43:52 CST)
- AMBER: Adding/recognizing calcium atoms Nitin Bhardwaj (Wed Dec 07 2005 - 15:24:38 CST)
- Re: AMBER: Adding/recognizing calcium atoms Bill Ross (Wed Dec 07 2005 - 15:32:05 CST)
- AMBER: error about using ambmask zhli_2000_at_126.com (Thu Dec 08 2005 - 07:40:34 CST)
- AMBER: Question on makeing up of missing atoms Benjamin Juhl (Fri Dec 09 2005 - 06:30:57 CST)
- AMBER: reading frcmod torsional parameters ivan_at_mmb.pcb.ub.es (Mon Dec 12 2005 - 07:44:36 CST)
- AMBER: question about mmpbsa cui wei (Tue Dec 13 2005 - 01:33:08 CST)
- AMBER: How to add water to calculate MMPBSA Kitiyaporn Wittayanarakul (Wed Dec 14 2005 - 12:06:53 CST)
- AMBER: nmode error: GNORM is greater than the requested maximum zhli_2000_at_126.com (Wed Dec 14 2005 - 20:16:07 CST)
- AMBER: error with compiling amber8 with lam on intel pc clusters Ye Mei (Wed Dec 14 2005 - 21:36:54 CST)
- AMBER: about antechamber(amber8) linfu (Thu Dec 15 2005 - 01:51:16 CST)
- AMBER: aniso and iso Yam (Thu Dec 15 2005 - 04:11:45 CST)
- AMBER: parameters for fluorine atom Morena Spreafico (Thu Dec 15 2005 - 06:33:52 CST)
- AMBER: Build for single precision David Caliga (Thu Dec 15 2005 - 09:31:02 CST)
- AMBER: parallel AMBER on cluster Kateryna Miroshnychenko (Thu Dec 15 2005 - 12:16:17 CST)
- Re: AMBER: parallel AMBER on cluster Carlos Simmerling (Thu Dec 15 2005 - 12:55:55 CST)
- AMBER: | ERROR: Could not read coords from rst file Jiapu.Zhang_at_csiro.au (Thu Dec 15 2005 - 20:26:46 CST)
- AMBER: installation on a dual core Barbault Florent (Fri Dec 16 2005 - 08:00:08 CST)
- AMBER: About Salt concentration Varsha Goyal (Fri Dec 16 2005 - 18:03:05 CST)
- AMBER: distance restraints Ed Pate (Sat Dec 17 2005 - 16:43:32 CST)
- AMBER: | ERROR: Could not read coords from *.rst Jiapu.Zhang_at_csiro.au (Sat Dec 17 2005 - 17:59:22 CST)
- AMBER: No exchange among replicas in REMD! Peng Tao (Sun Dec 18 2005 - 16:01:28 CST)
- Re: AMBER: No exchange among replicas in REMD! Carlos Simmerling (Sun Dec 18 2005 - 16:26:42 CST)
- Re: AMBER: No exchange among replicas in REMD! Peng Tao (Sun Dec 18 2005 - 19:45:03 CST)
- Re: AMBER: No exchange among replicas in REMD! Carlos Simmerling (Sun Dec 18 2005 - 20:23:14 CST)
- Re: AMBER: No exchange among replicas in REMD! Peng Tao (Mon Dec 19 2005 - 08:57:30 CST)
- Re: AMBER: No exchange among replicas in REMD! Carlos Simmerling (Mon Dec 19 2005 - 10:35:30 CST)
- Re: AMBER: No exchange among replicas in REMD! Peng Tao (Mon Dec 19 2005 - 12:35:24 CST)
- Re: AMBER: No exchange among replicas in REMD! Peng Tao (Sun Dec 18 2005 - 19:45:03 CST)
- Re: AMBER: No exchange among replicas in REMD! Carlos Simmerling (Sun Dec 18 2005 - 16:26:42 CST)
- AMBER: No exchange among replicas in REMD! Peng Tao (Sun Dec 18 2005 - 16:11:06 CST)
- AMBER: a quistion about compile cui wei (Mon Dec 19 2005 - 06:10:07 CST)
- Re: AMBER: a quistion about compile David A. Case (Mon Dec 19 2005 - 10:22:58 CST)
- Re: AMBER: a quistion about compile cui wei (Mon Dec 19 2005 - 19:00:20 CST)
- Re: AMBER: a quistion about compile snowyowls (Tue Dec 20 2005 - 07:30:07 CST)
- Re: AMBER: a quistion about compile David A. Case (Tue Dec 20 2005 - 10:56:58 CST)
- Re: AMBER: a quistion about compile snowyowls (Wed Dec 21 2005 - 08:53:21 CST)
- Re: AMBER: a quistion about compile David A. Case (Wed Dec 21 2005 - 15:01:52 CST)
- Re: AMBER: a quistion about compile snowyowls (Fri Dec 23 2005 - 06:32:52 CST)
- Re: AMBER: a quistion about compile Wei Zhang (Mon Dec 19 2005 - 11:01:22 CST)
- Re: AMBER: a quistion about compile David A. Case (Mon Dec 19 2005 - 10:22:58 CST)
- AMBER: MD problems (SHAKE) blakrose_at_gazeta.pl (Mon Dec 19 2005 - 06:49:41 CST)
- AMBER: Atoms restrain Angelo Pugliese (Mon Dec 19 2005 - 07:09:35 CST)
- AMBER: compiling leap with Xeon EM64 (suse linux 9.2) HL Eastwood (Mon Dec 19 2005 - 09:17:08 CST)
- AMBER: re: leap compilation problems xeon EM64 processor HL Eastwood (Mon Dec 19 2005 - 09:30:57 CST)
- AMBER: MD problems/shake blakrose_at_gazeta.pl (Mon Dec 19 2005 - 14:34:52 CST)
- Re: AMBER: MD problems/shake Thomas E. Cheatham, III (Mon Dec 19 2005 - 14:53:40 CST)
- Re: AMBER: MD problems/shake Bill Ross (Mon Dec 19 2005 - 14:59:04 CST)
- Re: AMBER: MD problems/shake blakrose_at_gazeta.pl (Mon Dec 19 2005 - 16:45:43 CST)
- Re: AMBER: MD problems/shake Bill Ross (Mon Dec 19 2005 - 17:14:10 CST)
- Re: AMBER: MD problems/shake blakrose_at_gazeta.pl (Mon Dec 19 2005 - 17:33:12 CST)
- Re: AMBER: MD problems/shake blakrose_at_gazeta.pl (Mon Dec 19 2005 - 17:44:59 CST)
- Re: AMBER: MD problems/shake Bill Ross (Mon Dec 19 2005 - 17:50:33 CST)
- Re: AMBER: MD problems/shake Bill Ross (Mon Dec 19 2005 - 17:54:01 CST)
- Re: AMBER: MD problems/shake blakrose_at_gazeta.pl (Mon Dec 19 2005 - 18:03:08 CST)
- Re: AMBER: MD problems/shake blakrose_at_gazeta.pl (Mon Dec 19 2005 - 18:07:44 CST)
- Re: AMBER: MD problems/shake blakrose_at_gazeta.pl (Tue Dec 20 2005 - 17:17:45 CST)
- AMBER: rdc multiple tensors dmcelh_at_uchicago.edu (Mon Dec 19 2005 - 17:01:13 CST)
- AMBER: Ligand problem bybaker_at_itsa.ucsf.edu (Mon Dec 19 2005 - 18:40:22 CST)
- AMBER: Sander.LES questions Bing Liu (Tue Dec 20 2005 - 08:51:09 CST)
- AMBER: rmsd Anthony Cruz (Tue Dec 20 2005 - 13:17:51 CST)
- Fwd: AMBER: rdc multiple tensors dmcelh_at_uchicago.edu (Tue Dec 20 2005 - 11:55:51 CST)
- AMBER: Re: Ligand problem bybaker_at_itsa.ucsf.edu (Tue Dec 20 2005 - 12:50:03 CST)
- Re: AMBER: MD problems/shake-many thanks blakrose_at_gazeta.pl (Tue Dec 20 2005 - 17:04:24 CST)
- AMBER: some questions about nmode zhli_2000_at_126.com (Tue Dec 20 2005 - 20:30:22 CST)
- AMBER: No skew or curtosis when zero variance in moment Ye Mei (Wed Dec 21 2005 - 09:56:43 CST)
- AMBER: lib-4324 : UNRECOVERABLE library error lv haiting (Wed Dec 21 2005 - 20:31:46 CST)
- AMBER: Amber crashes at simulation in the NVT ensemble with the periodic box equiilbrated in the NPT ensemble. Sergey Krishtal (Thu Dec 22 2005 - 00:15:14 CST)
- AMBER: Merry Xmas Angelo Pugliese (Thu Dec 22 2005 - 05:43:14 CST)
- AMBER: increase the limit of restraintmask Sichun Yang (Thu Dec 22 2005 - 12:58:14 CST)
- AMBER: does the result of H bond is consistent with the ∆Eele of MM_PBSA? haixiao jin (Thu Dec 22 2005 - 22:12:46 CST)
- AMBER: the averaged structure VS the specific snapshot haixiao jin (Thu Dec 22 2005 - 22:24:04 CST)
- AMBER: ERROR in readParm: ...failed to find ANGLES_INC_HYDROGEN Priti Hansia (Fri Dec 23 2005 - 05:28:57 CST)
- AMBER: ambpdb TER problems Sam (Fri Dec 23 2005 - 10:23:26 CST)
- Re: AMBER: ambpdb TER problems David A. Case (Fri Dec 23 2005 - 19:53:50 CST)
- Re: AMBER: ambpdb TER problems samuel.arey_at_epfl.ch (Mon Dec 26 2005 - 13:26:27 CST)
- Re: AMBER: ambpdb TER problems Bill Ross (Mon Dec 26 2005 - 15:27:07 CST)
- AMBER: To post or mail to the list (subscribers only) ping jiang (Fri Dec 23 2005 - 14:07:45 CST)
- AMBER: (no subject) ping jiang (Fri Dec 23 2005 - 14:46:58 CST)
- AMBER: problem with improper torsions in parmchk Kateryna Miroshnychenko (Mon Dec 26 2005 - 10:55:54 CST)
- AMBER: building amino acid based surfactants? Eugene Billiot (Mon Dec 26 2005 - 15:25:33 CST)
- AMBER: problem with ssh and xleap A D (Tue Dec 27 2005 - 14:12:51 CST)
- AMBER: problem of calculate the charge ping jiang (Tue Dec 27 2005 - 18:47:16 CST)
- AMBER: problem of calculate the charge2 ping jiang (Tue Dec 27 2005 - 20:17:05 CST)
- AMBER: Question about partial charge for ligand molecules Woojin Lee (Wed Dec 28 2005 - 20:37:47 CST)
- AMBER: non bond over flow S.Sundar Raman (Wed Dec 28 2005 - 21:50:27 CST)
- AMBER:how to deal with metal ion? snowyowls (Fri Dec 30 2005 - 00:24:58 CST)
- Re: AMBER:how to deal with metal ion? samuel.arey_at_epfl.ch (Fri Dec 30 2005 - 04:56:08 CST)
- Re: AMBER:how to deal with metal ion? samuel.arey_at_epfl.ch (Fri Dec 30 2005 - 05:05:39 CST)
- Re: AMBER:how to deal with metal ion? Tim Meyer (Fri Dec 30 2005 - 10:05:06 CST)
- Re: AMBER:how to deal with metal ion? Tim Meyer (Fri Dec 30 2005 - 10:09:07 CST)
Last message date: Sat Dec 31 2005 - 12:51:27 CST
Archived on: Sat Dec 31 2005 - 12:51:46 CST
228 messages sorted by: [ author ] [ date ] [ subject ]
About this archive
|
VU Home |
VUMC Home |
People Finder |
University Calendar
webmaster- modified on January 30, 2009 |