Rosetta Workshop - November 12-15, 2013

Preparing for the Workshop

UNIX Operating Systems

Workshop participants are expected to be familiar with UNIX-like operating systems. Before the workshop, please review the following resources:

Tutorial Introduction to UNIX Commands:
From the Center for Structural Biology at Vanderbilt

University of Surrey Unix Terminal Tutorials:
Contains workable examples. Highly recommended.

Linux Command: Learning the Shell

Linux Self-Test

Scripting Languages

Rosetta users often prepare input files and analyze Rosetta output models using scripts written in Python or Perl. We recommend familiarizing yourself with Python:

Python Tutorial

Molecular Visualization Tools

You will also need a tool to visualize biomolecular structures. We will be using PyMOL, but you can use any of the tools below:

PyMOL

Chimera

RasMol

Rosetta Resources

You can learn more about Rosetta using these resources:

Rosetta 3.4 User Guide

The tutorials are based on on this paper:

Kaufmann, K. W., Lemmon, G. H., Deluca, S. L., Sheehan, J. H., & Meiler, J. (2010). Practically useful: what the Rosetta protein modeling suite can do for you. Biochemistry, 49(14), 2987-2998.

Paper Supplement

Rosetta Workshop 2013 tutorials are found here

Rosetta Workshop 2013: November 12-15

Announcements:

This workshop is over. >>>Click Here<<< for information about upcoming workshops.

Rosetta Workshop - November 12-15, 2013

Preparing for the Workshop