Rosetta Membrane Workshop

Preparing for the Workshop

UNIX Operating Systems

Workshop participants are expected to be familiar with UNIX-like operating systems. Before the workshop, please review the following resources:

• Tutorial Introduction to UNIX Commands:
  From the Center for Structural Biology at Vanderbilt
• University of Surrey Unix Terminal Tutorials:
  Contains workable examples. Highly recommended
• Linux Command: Learning the Shell

Scripting Languages

Rosetta users often prepare input files and analyze Rosetta output models using scripts written in Python or Perl. We recommend familiarizing yourself with Python:

• Python Tutorial

Molecular Visualization Tools

You will also need a tool to visualize biomolecular structures. We will be using PyMOL, but you can use any of the tools below:

• PyMOL
• Chimera
• RasMol

Rosetta Resources

You can learn more about Rosetta using these resources:

• Rosetta 3.5 User Guide

The tutorials are based on on this paper:

• Kaufmann, K. W., Lemmon, G. H., Deluca, S. L., Sheehan, J. H., & Meiler, J. (2010). Practically useful: what the Rosetta protein modeling suite can do for you. Biochemistry, 49(14), 2987-2998.
• Paper Supplement

Rosetta Workshop 2013 tutorials are found here