AMBER Archive (2008)

Subject: AMBER: analysing normal modes

From: Chris Moth (chris.moth_at_vanderbilt.edu)
Date: Wed Jul 09 2008 - 14:45:57 CDT

NMDisplay, a sister product for MDDisplay that I am just about to publish
to the list, does this quite nicely.

What platform do you use? I'll send you the new files you need and draft
instructions.

http://structbio.vanderbilt.edu/~mothcw/mddisplay/

> Dear amber users,
>
> Apart from IED, are there any other tools or scripts that can be used to
> generate frames along normal modes caluclated by nmode (amber) or NAB?
> I can use ptraj to generate fluctuation plots along the normal modes but I
> am interested in generating frames to visualise.
>
> Thank you in advance for your help,
>
> Nadia
>
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