AMBER Archive (2008)

Subject: RE: AMBER: analysing normal modes

From: Vahdati N. (nadiav_at_soton.ac.uk)
Date: Thu Jul 10 2008 - 07:49:15 CDT

Dear Chris,

Is there a need for me to install MDDisplay, or is NMDisplay completely independent?

Thank you,
Nadia

________________________________________
From: owner-amber_at_scripps.edu [owner-amber_at_scripps.edu] On Behalf Of Chris Moth [chris.moth_at_vanderbilt.edu]
Sent: 09 July 2008 20:45
To: amber_at_scripps.edu
Cc: amber_at_scripps.edu
Subject: AMBER: analysing normal modes

NMDisplay, a sister product for MDDisplay that I am just about to publish
to the list, does this quite nicely.

What platform do you use? I'll send you the new files you need and draft
instructions.

http://structbio.vanderbilt.edu/~mothcw/mddisplay/

> Dear amber users,
>
> Apart from IED, are there any other tools or scripts that can be used to
> generate frames along normal modes caluclated by nmode (amber) or NAB?
> I can use ptraj to generate fluctuation plots along the normal modes but I
> am interested in generating frames to visualise.
>
> Thank you in advance for your help,
>
> Nadia
>
> -----------------------------------------------------------------------
> The AMBER Mail Reflector
> To post, send mail to amber_at_scripps.edu
> To unsubscribe, send "unsubscribe amber" (in the *body* of the email)
> to majordomo_at_scripps.edu
>

-----------------------------------------------------------------------
The AMBER Mail Reflector
To post, send mail to amber_at_scripps.edu
To unsubscribe, send "unsubscribe amber" (in the *body* of the email)
      to majordomo_at_scripps.edu

-----------------------------------------------------------------------
The AMBER Mail Reflector
To post, send mail to amber_at_scripps.edu
To unsubscribe, send "unsubscribe amber" (in the *body* of the email)
      to majordomo_at_scripps.edu