AMBER Archive (2008)

Subject: Re: AMBER:

From: Carlos Simmerling (carlos.simmerling_at_gmail.com)
Date: Tue Jul 01 2008 - 07:15:15 CDT


have you tried running ambpdb from the unix shell instead of inside xleap?

On Tue, Jul 1, 2008 at 4:36 AM, Anna Reymer <reymer_at_chalmers.se> wrote:
> Dear All,
> I am doing the loop modelling and have the following problem running
> ambpdb from xleap window in AMBER10:
>
>>ambpdb -p myfile.prmtop < myfile.inpcrd > myfile.pdb
> ERROR: syntax error
>
>
> The myfile.prmtop and myfile.inpcrd were created properly.
> Any suggestions?
>
> regards,
> Anna
>
> -----------
> Anna Reymer, PhD student
> Physical Chemistry,
> Department of Chemical and Biological Engineering
> Chalmers University of Technology
> Kemivägen 10
> SE-412 96 Gothenburg
> Sweden
>
> Phone: +46-(0)31-7722815
>
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