AMBER Archive (2008)

Subject: AMBER: AMBER10: ambpdb problems

From: Anna Reymer (reymer_at_chalmers.se)
Date: Tue Jul 01 2008 - 03:37:38 CDT

Dear All,
I am doing the loop modelling and have the following problem running
ambpdb from xleap window in AMBER10:

>ambpdb -p myfile.prmtop < myfile.inpcrd > myfile.pdb
ERROR: syntax error

The myfile.prmtop and myfile.inpcrd were created properly.
Any suggestions?

regards,
Anna

-----------
Anna Reymer, PhD student
Physical Chemistry,
Department of Chemical and Biological Engineering
Chalmers University of Technology
Kemivägen 10
SE-412 96 Gothenburg
Sweden

Phone: +46-(0)31-7722815

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