AMBER Archive (2008)

Subject: Re: AMBER:

From: Anna Reymer (reymer_at_chalmers.se)
Date: Tue Jul 01 2008 - 07:46:24 CDT

Dear all!
ambpdb works perfectly fine from the unix shell. I think I have just
misunderstood that I can run it inside xleap.

Thanks for the help.

> have you tried running ambpdb from the unix shell instead of inside xleap?
>
>
> On Tue, Jul 1, 2008 at 4:36 AM, Anna Reymer <reymer_at_chalmers.se> wrote:
>> Dear All,
>> I am doing the loop modelling and have the following problem running
>> ambpdb from xleap window in AMBER10:
>>
>>>ambpdb -p myfile.prmtop < myfile.inpcrd > myfile.pdb
>> ERROR: syntax error
>>
>>
>> The myfile.prmtop and myfile.inpcrd were created properly.
>> Any suggestions?
>>
>> regards,
>> Anna
>>
>> -----------
>> Anna Reymer, PhD student
>> Physical Chemistry,
>> Department of Chemical and Biological Engineering
>> Chalmers University of Technology
>> Kemivägen 10
>> SE-412 96 Gothenburg
>> Sweden
>>
>> Phone: +46-(0)31-7722815
>>
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