AMBER Archive (2008)

Subject: Re: AMBER: About RAMD

From: Carlos Simmerling (carlos.simmerling_at_gmail.com)
Date: Sat Jan 05 2008 - 10:12:40 CST

what is RAMD? do you mean REMD? if so, that is available
in Amber9.

On Jan 5, 2008 5:39 AM, Francesco Pietra <chiendarret_at_yahoo.com> wrote:

> I was just informed from Professor Wade that RAMD at the moment can only
> be
> implemented into Amber 8.
>
> As I am most curious to try to follow the path of a ligand out of a
> protein
> embedded in a membrane, is it possible to get Amber 8 (having a personal
> license for Amber 9) and temporarily, for that computation, install it on
> the
> same machine (dual opterons, shared memory) without unistalling Amber 9?
> Amber
> 9 was ifort/icc compiled, parallel support from OpenMPI 1.2.3.
>
> Thanks
>
> francesco pietra
>
>
>
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-- 
===================================================================
Carlos L. Simmerling, Ph.D.
Associate Professor                 Phone: (631) 632-1336
Center for Structural Biology       Fax:   (631) 632-1555
CMM Bldg, Room G80
Stony Brook University              E-mail: carlos.simmerling_at_gmail.com
Stony Brook, NY 11794-5115          Web: http://comp.chem.sunysb.edu
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