AMBER Archive (2008)

Subject: Re: AMBER: About RAMD

From: Francesco Pietra (chiendarret_at_yahoo.com)
Date: Sat Jan 05 2008 - 10:26:01 CST

RAMD = Random Acceleration Molecular Dynamics
http://projects.villa-bosch.de/mcm/software/amber
Cheers
francesco

--- Carlos Simmerling <carlos.simmerling_at_gmail.com> wrote:

> what is RAMD? do you mean REMD? if so, that is available
> in Amber9.
>
>
> On Jan 5, 2008 5:39 AM, Francesco Pietra <chiendarret_at_yahoo.com> wrote:
>
> > I was just informed from Professor Wade that RAMD at the moment can only
> > be
> > implemented into Amber 8.
> >
> > As I am most curious to try to follow the path of a ligand out of a
> > protein
> > embedded in a membrane, is it possible to get Amber 8 (having a personal
> > license for Amber 9) and temporarily, for that computation, install it on
> > the
> > same machine (dual opterons, shared memory) without unistalling Amber 9?
> > Amber
> > 9 was ifort/icc compiled, parallel support from OpenMPI 1.2.3.
> >
> > Thanks
> >
> > francesco pietra
> >
> >
> >
> >
>
____________________________________________________________________________________
> > Be a better friend, newshound, and
> > know-it-all with Yahoo! Mobile. Try it now.
> > http://mobile.yahoo.com/;_ylt=Ahu06i62sR8HDtDypao8Wcj9tAcJ
> >
> > -----------------------------------------------------------------------
> > The AMBER Mail Reflector
> > To post, send mail to amber_at_scripps.edu
> > To unsubscribe, send "unsubscribe amber" to majordomo_at_scripps.edu
> >
>
>
>
> --
> ===================================================================
> Carlos L. Simmerling, Ph.D.
> Associate Professor Phone: (631) 632-1336
> Center for Structural Biology Fax: (631) 632-1555
> CMM Bldg, Room G80
> Stony Brook University E-mail: carlos.simmerling_at_gmail.com
> Stony Brook, NY 11794-5115 Web: http://comp.chem.sunysb.edu
> ===================================================================
>

      ____________________________________________________________________________________
Looking for last minute shopping deals?
Find them fast with Yahoo! Search. http://tools.search.yahoo.com/newsearch/category.php?category=shopping
-----------------------------------------------------------------------
The AMBER Mail Reflector
To post, send mail to amber_at_scripps.edu
To unsubscribe, send "unsubscribe amber" to majordomo_at_scripps.edu