AMBER Archive (2007)

Subject: Re: AMBER: amber9 leap installation error on sgi_altix

From: David A. Case (case_at_scripps.edu)
Date: Tue Nov 13 2007 - 17:27:55 CST

On Tue, Nov 13, 2007, wei zhang wrote:
>
> I have some problem of installing amber9 on sgi_altix
> machine. All the rest seems all right except Leap.
>
> I applied bugfix.all patch
> compiler: l_cc_c_9.1.042 and l_fc_c_9.1.036
> ./configure sgi_altix
> make serial
>
> Below are the error message:
>
> ../Xmu/libXmu.a -L/usr/X11R6/lib64 -L/usr/X11R6/lib
> -lXt -lXext -lSM -lICE -lX11 -lm -lpthread
> ld: skipping incompatible /usr/X11R6/lib64/libXt.so

Weird. Neither of the two sgi_altix machines we have even have a
/usr/X11R6/lib64 directory. Does your machine have a /usr/X11R6/lib
directory?

Unless you really need to run xleap on an altix, a workaround is to just
give the "-noX11" flag to configure.

If you want to track it down, figure out exactly how you are compiling the
leap files. My guess is that you are compiling 32 bit versions, then failing
to link into what are 64-bit versions of the X-libraries.

...dac

-----------------------------------------------------------------------
The AMBER Mail Reflector
To post, send mail to amber_at_scripps.edu
To unsubscribe, send "unsubscribe amber" to majordomo_at_scripps.edu