AMBER Archive (2007)

Subject: Re: AMBER: using amber to minimize structure obatined from cyana

From: David A. Case (case_at_scripps.edu)
Date: Mon Jul 23 2007 - 09:52:00 CDT

On Mon, Jul 23, 2007, Prem Prakash Pathak wrote:

> i am have obtained a protein structure by using cyana. Now wanted to
> minimize the structure using amber.
> I have *.upl for distance constraint file,
> *.aco for angle constraint file
> and *.pdb
>
> How to use these file to do the energy refinement for the structure i
> have obtained from cyana.

Please see section 6.12 of the Users' Manual, or tutorial A4.

...dac

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