AMBER Archive (2007)

Subject: AMBER: using amber to minimize structure obatined from cyana

From: Prem Prakash Pathak (prempolymer_at_gmail.com)
Date: Mon Jul 23 2007 - 02:27:26 CDT

Dear Amber user.
i am have obtained a protein structure by using cyana. Now wanted to
minimize the structure using amber.
I have *.upl for distance constraint file,
*.aco for angle constraint file
and *.pdb

How to use these file to do the energy refinement for the structure i
have obtained from cyana.
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