AMBER Archive (2007)

Subject: Re: AMBER: hi

From: Carlos Simmerling (carlos.simmerling_at_gmail.com)
Date: Fri Mar 16 2007 - 05:14:15 CST

it means it cannot open your trajectory file, check to make sure you
gave the correct name.

On 3/16/07, Anju Sharma <anju.020384_at_gmail.com> wrote:
>
> Hi everybody,
>
> Aftr running MD for my DNA seq in vacuo nw m analysing the results. when m
> runing ptraj files m getting follwing warnings:
>
> PTRAJ: Processing input file...
> Input is from standard input
>
> PTRAJ: trajin polyAT_gb_md1_12Acut.mdcrd
> Checking coordinates: polyAT_gb_md1_12Acut.mdcrd
>
> Could not open file (polyAT_gb_md1_12Acut.mdcrd) with mode (r)
> WARNING in checkCoordinates(): Could not open file
> (polyAT_gb_md1_12Acut.mdcrd)
> WARNING in ptrajSetupIO(): trajin polyAT_gb_md1_12Acut.mdcrd, cannot open
> file...
>
> PTRAJ: rms first mass out polyAT_gb_md1_12Acut.rms time 0.1
> Mask [*] represents 638 atoms
> WARNING in ptraj(): No input trajectories specified (trajin), aborting...
> [root_at_amber polyAT_gb_md1_12Acut]#
>
> Is dere smthng wrong? or run is successful, m nt able to interpret above
> lines. please help in dis....
> --
> Anju Sharma
-----------------------------------------------------------------------
The AMBER Mail Reflector
To post, send mail to amber_at_scripps.edu
To unsubscribe, send "unsubscribe amber" to majordomo_at_scripps.edu