AMBER Archive (2007)

Subject: AMBER: hi

From: Anju Sharma (anju.020384_at_gmail.com)
Date: Fri Mar 16 2007 - 04:50:44 CST

Hi everybody,

Aftr running MD for my DNA seq in vacuo nw m analysing the results. when m
runing ptraj files m getting follwing warnings:

PTRAJ: Processing input file...
       Input is from standard input

PTRAJ: trajin polyAT_gb_md1_12Acut.mdcrd
Checking coordinates: polyAT_gb_md1_12Acut.mdcrd

Could not open file (polyAT_gb_md1_12Acut.mdcrd) with mode (r)
WARNING in checkCoordinates(): Could not open file
(polyAT_gb_md1_12Acut.mdcrd)
WARNING in ptrajSetupIO(): trajin polyAT_gb_md1_12Acut.mdcrd, cannot open
file...

PTRAJ: rms first mass out polyAT_gb_md1_12Acut.rms time 0.1
Mask [*] represents 638 atoms
WARNING in ptraj(): No input trajectories specified (trajin), aborting...
[root_at_amber polyAT_gb_md1_12Acut]#

Is dere smthng wrong? or run is successful, m nt able to interpret above
lines. please help in dis.... 

-- 
Anju Sharma

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