AMBER Archive (2007)Subject: Re: AMBER: DNA structure analysis
From: Fenghui Fan (fenghui_fan_at_yahoo.com)
Date: Wed Jan 17 2007 - 09:31:00 CST
Pymol and MolMol will be suitable.
Fenghui Fan
--- Catein Catherine <askamber23_at_hotmail.com> wrote:
> Dear Sir/Madam,
>
> I have done a 1 ns MD for a DNA-intercalator
> structure, I could like to
> analysis the twist, rise, roll of the flanking base
> pair and the sugar
> puckering along the trajectory. Could you mind to
> teach me how to do this
> with amber or any other free softwares?
>
> Thank you!
>
> Best regards,
>
> FM
>
>
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