AMBER Archive (2007)

Subject: AMBER: DNA structure analysis

From: Catein Catherine (askamber23_at_hotmail.com)
Date: Tue Jan 16 2007 - 21:12:42 CST


Dear Sir/Madam,

I have done a 1 ns MD for a DNA-intercalator structure, I could like to
analysis the twist, rise, roll of the flanking base pair and the sugar
puckering along the trajectory. Could you mind to teach me how to do this
with amber or any other free softwares?

Thank you!

Best regards,

FM

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