AMBER Archive (2007)

Subject: Re: AMBER: DNA structure analysis

From: Catein Catherine (askamber23_at_hotmail.com)
Date: Wed Jan 17 2007 - 10:24:16 CST


Thank you very much Fenghui!

>From: Fenghui Fan <fenghui_fan_at_yahoo.com>
>Reply-To: amber_at_scripps.edu
>To: amber_at_scripps.edu
>Subject: Re: AMBER: DNA structure analysis
>Date: Wed, 17 Jan 2007 07:31:00 -0800 (PST)
>
>Pymol and MolMol will be suitable.
>
>Fenghui Fan
>
>
>--- Catein Catherine <askamber23_at_hotmail.com> wrote:
>
> > Dear Sir/Madam,
> >
> > I have done a 1 ns MD for a DNA-intercalator
> > structure, I could like to
> > analysis the twist, rise, roll of the flanking base
> > pair and the sugar
> > puckering along the trajectory. Could you mind to
> > teach me how to do this
> > with amber or any other free softwares?
> >
> > Thank you!
> >
> > Best regards,
> >
> > FM
> >
> >
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> >
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>
>
>
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