AMBER Archive (2006)

Subject: AMBER: How to specify a box with few walls rigid and others with periodic boundary conditions and then apply a pressure gradient across it?

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dear users,
                How to define a rectangular box with two sides having a
periodic boundary condition and the rest with a rigid boundary condition?
Also how to apply a pressure gradient across a box ? Is there any command in
amber which could achieve this?
Please suggest some way to achieve this. Its very important.
thanx a lot
regards

-- 
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Gobind Singh Bisht
Department Of Biotechnology
IIT Kharagpur, Kharagpur-721302
West Bengal, India
Ph No: +919932604909
Website: http://users.cjb.net/gobindbisht/
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• Next message: Chengwen Chen: "AMBER: How to run QM/MM simulation of DNA duplex bound with platinum moietes"
• Previous message: Chengwen Chen: "AMBER: How to run MD simulation of a silicon containing complex with AMBER9?"
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