AMBER Archive (2006)

Subject: AMBER: How to run QM/MM simulation of DNA duplex bound with platinum moietes

From: Chengwen Chen (chenchengwen_at_gmail.com)
Date: Thu Nov 30 2006 - 02:07:28 CST

Dear AMBER user,

I would like to run QM/MM simulation of DNA duplex bound with platinum
moietes with AMBER9. But the elements supported by QM method (check from
AMBER9 manual) does not include platinum atom. Does it means that I can't do
this simulation with AMBER? Would you give me any suggersions?

Thank you very much!

Best wishes,
Wendy

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