AMBER Archive (2006)

Subject: AMBER: How to run MD simulation of a silicon containing complex with AMBER9?

From: Chengwen Chen (
Date: Thu Nov 30 2006 - 01:06:54 CST

 Dear all,

I am plan to do a MD simulation of DNA duplex bound by small molecules
(silicon atom contained) with AMBER9. I seems that there are no silicon
atom parameters defined in AMBER force field. How can I get those
parameters? Or any other method to run the simulation?

Thank you very much!

Best Wishes,

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