AMBER Archive (2006)

Subject: AMBER: How to run MD simulation of a silicon containing complex with AMBER9?

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 Dear all,

I am plan to do a MD simulation of DNA duplex bound by small molecules
(silicon atom contained) with AMBER9. I seems that there are no silicon
atom parameters defined in AMBER force field. How can I get those
parameters? Or any other method to run the simulation?

Thank you very much!

Best Wishes,
Wendy

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• Next message: Gobind Singh Bisht: "AMBER: How to specify a box with few walls rigid and others with periodic boundary conditions and then apply a pressure gradient across it?"
• Previous message: a a: "Re: AMBER: How to apply a force to some atom in a residues?"
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