AMBER Archive (2006)

Subject: Re: AMBER: Installation amber 9 on IBM SP4

From: Scott Brozell (sbrozell_at_scripps.edu)
Date: Thu Aug 24 2006 - 20:50:31 CDT

Hi,

On Thu, 24 Aug 2006, Myunggi Yi wrote:

> Thank you.
>
> Now I've got the following error message
>
> cd ptraj; make install
> xlc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2
> -DCLINK_PLAIN -o main.o main.c
> "actions.h", line 209.21: 1506-275 (S) Unexpected text ',' encountered.
> make: 1254-004 The error code from the last command is 1.
>

   206 typedef enum _transformContactsType {
   207 CONTACTS_NULL = 0,
   208 CONTACTS_FIRST,
   209 CONTACTS_REFERENCE,
   210 } transformContactsType;

Remove the comma from line 209 of src/ptraj/actions.h.
This looks like it will become a bugfix.
I'll check the C standard first.

Scott

> On 8/24/06, Ross Walker <ross_at_rosswalker.co.uk> wrote:
> > Dear Myunggi
> >
> > > I don't have vtanh.
> > >
> > > Would you send me the patch?
> >
> > The following patch should solve it.
> >
> > Copy it to $AMBERHOME/src/sander
> >
> > Then do:
> >
> > patch -p0 <no_vtanh.patch
> >
> > Then recompile.
> >
> > All the best
> > Ross
> >
> > /\
> > \/
> > |\oss Walker
> >
> > | HPC Consultant and Staff Scientist |
> > | San Diego Supercomputer Center |
> > | Tel: +1 858 822 0854 | EMail:- ross_at_rosswalker.co.uk |
> > | http://www.rosswalker.co.uk | PGP Key available on request |
> >
> > Note: Electronic Mail is not secure, has no guarantee of delivery, may not
> > be read every day, and should not be used for urgent or sensitive issues.
> >
> >
> >
>
>
> --
> Best wishes,
>
> MYUNGGI YI
> ==================================
> KLB 419
> Institute of Molecular Biophysics
> Florida State University
> Tallahassee, FL 32306
>
> Office: (850) 645-1334
> http://www.scs.fsu.edu/~myunggi
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