AMBER Archive (2006)

Subject: Re: AMBER: Installation amber 9 on IBM SP4

From: Myunggi Yi (myunggi_at_gmail.com)
Date: Thu Aug 24 2006 - 20:29:58 CDT

Thank you.

Now I've got the following error message

tb_repulsiv.o qm2_dftb_self.o qm2_dftb_shift.o qm2_dftb_short_range.o
qm2_dftb_skpar.o qm2_dftb_slkode.o qm2_dftb_slktrafo.o is_init.o
amoeba_valence.o amoeba_multipoles.o amoeba_recip.o amoeba_interface.o
amoeba_direct.o amoeba_mdin.o amoeba_adjust.o amoeba_self.o
amoeba_vdw.o amoeba_induced.o amoeba_runmd.o bintraj.o
spatial_recip.o spatial_fft.o evb_vars.o evb_input.o evb_init.o
evb_alloc.o evb_dealloc.o check_input.o evb_io.o evb_keywrd.o
exchange_CM.o evb_mcp.o evb_force.o diabatic.o evb_2stdebug.o
egap_umb_2stdebug.o exchange_gauss.o exchange_warshel.o morsify.o
morse_anal2num.o evb_matrix.PIMD.o evb_ntrfc.PIMD.o
evb_pimd_init.PIMD.o out_evb.PIMD.o ../lmod/lmod.a ../lapack/lapack.a
../blas/blas.a ../lib/nxtsec.o ../lib/sys.a -L/usr/lib -lmassv
-L/usr/lib -lblas
        /bin/mv sander sander.LES ambmask sander.PIMD ../../exe
        cd ptraj; make install
        xlc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -O2
-DCLINK_PLAIN -o main.o main.c
"actions.h", line 209.21: 1506-275 (S) Unexpected text ',' encountered.
make: 1254-004 The error code from the last command is 1.

Stop.
make: 1254-004 The error code from the last command is 2.

Stop.

On 8/24/06, Ross Walker <ross_at_rosswalker.co.uk> wrote:
> Dear Myunggi
>
> > I don't have vtanh.
> >
> > Would you send me the patch?
>
> The following patch should solve it.
>
> Copy it to $AMBERHOME/src/sander
>
> Then do:
>
> patch -p0 <no_vtanh.patch
>
> Then recompile.
>
> All the best
> Ross
>
> /\
> \/
> |\oss Walker
>
> | HPC Consultant and Staff Scientist |
> | San Diego Supercomputer Center |
> | Tel: +1 858 822 0854 | EMail:- ross_at_rosswalker.co.uk |
> | http://www.rosswalker.co.uk | PGP Key available on request |
>
> Note: Electronic Mail is not secure, has no guarantee of delivery, may not
> be read every day, and should not be used for urgent or sensitive issues.
>
>
> 

-- 
Best wishes,

MYUNGGI YI
==================================
KLB 419
Institute of Molecular Biophysics
Florida State University
Tallahassee, FL 32306

Office: (850) 645-1334
http://www.scs.fsu.edu/~myunggi
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