AMBER Archive (2006)

Subject: Re: AMBER: Compiling AMBER 9 on windows XP using cygwin

From: Emilio Xavier Esposito (emilio.esposito_at_ndsu.edu)
Date: Fri Jul 07 2006 - 11:13:40 CDT

Hi Gobind
I think you need to add the following in your .bashrc file:

export AMBERHOME='/home/user/amber9'
export PATH=$PATH:$AMBERHOME/exe

Make sure to source your .bashrc file or restart cygwin. Amber should
then work.

Emilio

Gobind Bisht wrote:
> Hi Gustavo,
> Thanx a lot! AMBER 9 did get installed but it's not
> recognising 'tleap' or 'xleap'. What could this be due to?Is it possible
> to open xleap from cygwin in windows?
> thanx a lot
> gobind
>
> On 7/7/06, *Gustavo Seabra* <gustavo.seabra_at_gmail.com
> <mailto:gustavo.seabra_at_gmail.com>> wrote:
>
> On 7/7/06, *Gobind Bisht* <gsbisht1_at_gmail.com
> <mailto:gsbisht1_at_gmail.com>> wrote:
>
> Hi Emilio,
> I did install all the development tools/files as u
> told but after that it began giving some other problem and used
> only g95:
> after the command :make serial
> the following happened:
>
> --------------------------------------------------------------------------------------
>
> Starting installation of AMBER 9
> cd lib; make install
> make [1]:Entering directory 'home/user/amber9/src/lib'
> g95 -o new2oldparm.o nxtsec.o
> my new2oldparm.exe ../../exe
> /bin/rm _*.f
> /bin/rm: cannot remove '_*.f':nNo such file or directory
> make[1]: [instal] Error 1,ignore.
> make[1]: leaving directory..............................
> cd addles ; make install
> make[1]; make install
> make[1]: Entering directory '/home/user/amber9/src/addles'
> cd../lib; ./Makelist../lib/random.o../lib/mexit.o../lib/nxtsec.o
> /bin/sh:./Makelist :/bin/csh:bad interpreter: no such file or
> directory
>
>
> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>
> This error seems to indicate that you don't have the C-Shell
> installed. Could you check that? (I think Cygwin does not install
> all shells by default.)
>
> Gustavo.
>
>
>
>
>
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