AMBER Archive (2006)

Subject: Re: AMBER: Compiling AMBER 9 on windows XP using cygwin

From: Gobind Bisht (gsbisht1_at_gmail.com)
Date: Fri Jul 07 2006 - 11:39:31 CDT

Hi Emilio,
              thanx a lot. its working. thanx to Gustavo also.

On 7/7/06, Emilio Xavier Esposito <emilio.esposito_at_ndsu.edu> wrote:
>
> Hi Gobind
> I think you need to add the following in your .bashrc file:
>
> export AMBERHOME='/home/user/amber9'
> export PATH=$PATH:$AMBERHOME/exe
>
> Make sure to source your .bashrc file or restart cygwin. Amber should
> then work.
>
> Emilio
>
>
> Gobind Bisht wrote:
> > Hi Gustavo,
> > Thanx a lot! AMBER 9 did get installed but it's not
> > recognising 'tleap' or 'xleap'. What could this be due to?Is it possible
> > to open xleap from cygwin in windows?
> > thanx a lot
> > gobind
> >
> > On 7/7/06, *Gustavo Seabra* <gustavo.seabra_at_gmail.com
> > <mailto:gustavo.seabra_at_gmail.com>> wrote:
> >
> > On 7/7/06, *Gobind Bisht* <gsbisht1_at_gmail.com
> > <mailto:gsbisht1_at_gmail.com>> wrote:
> >
> > Hi Emilio,
> > I did install all the development tools/files as u
> > told but after that it began giving some other problem and used
> > only g95:
> > after the command :make serial
> > the following happened:
> >
> >
> --------------------------------------------------------------------------------------
> >
> > Starting installation of AMBER 9
> > cd lib; make install
> > make [1]:Entering directory 'home/user/amber9/src/lib'
> > g95 -o new2oldparm.o nxtsec.o
> > my new2oldparm.exe ../../exe
> > /bin/rm _*.f
> > /bin/rm: cannot remove '_*.f':nNo such file or directory
> > make[1]: [instal] Error 1,ignore.
> > make[1]: leaving directory..............................
> > cd addles ; make install
> > make[1]; make install
> > make[1]: Entering directory '/home/user/amber9/src/addles'
> > cd../lib; ./Makelist../lib/random.o../lib/mexit.o../lib/nxtsec.o
> > /bin/sh:./Makelist :/bin/csh:bad interpreter: no such file or
> > directory
> >
> >
> > ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
> >
> > This error seems to indicate that you don't have the C-Shell
> > installed. Could you check that? (I think Cygwin does not install
> > all shells by default.)
> >
> > Gustavo.
> >
> >
> >
> >
> >
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-- 
Gobind Singh Bisht
Btech II yr, Department Of Biotechnology
IIT Kharagpur, Kharagpur-721302
West Bengal,

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