AMBER Archive (2004)

Subject: AMBER: Water Box & MD

From: bybaker_at_itsa.ucsf.edu
Date: Thu Sep 02 2004 - 16:48:00 CDT

('binary' encoding is not supported, stored as-is) Hello, Amber:

I am planning to run MD with my protein model. I notice that there are
quite a few water boxes are available at Amber, such as WATERBOX216.
Which one is generally used for protein simulation? I use Amber7 with
ff94 + frcmod.mod_phipsi.1.

Thank you for your advice.

Bo

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