AMBER Archive (2004)

Subject: AMBER: loading frcmod.mod_phipsi.1

From: bybaker_at_itsa.ucsf.edu
Date: Thu Sep 02 2004 - 16:12:04 CDT

('binary' encoding is not supported, stored as-is) Hello, Amber:

Referring to the Amber8 manual, the frcmod.mod_phipsi.1 ( or .2) should
be loaded if one wants to use ff99 for protein stimulation. I downloaded
the 'frcmod.mod_phipsi.1' file from Amber site but could not open or read
it. When I tried to use 'tleap' to load this file, it could not found or
be opened. But the file is there. I checked Amber mail list, no one
mentioned this problem. Can anyone helps me on how to load this file? I
use Amber7.

Thank you very much.

Bo

The following is how I did with tleap:

guanine.2% setenv AMBERHOME /usr/local/amber7
guanine.3% $AMBERHOME/exe/xleap
Error: Can't open display: mriv209-01.ucsf.edu:0
guanine.4% $AMBERHOME/exe/tleap
-I: Adding /usr/local/amber7/dat/leap/prep to search path.
-I: Adding /usr/local/amber7/dat/leap/lib to search path.
-I: Adding /usr/local/amber7/dat/leap/parm to search path.
-I: Adding /usr/local/amber7/dat/leap/cmd to search path.

Welcome to LEaP!
(no leaprc in search path)
> source leaprc.ff99
----- Source: /usr/local/amber7/dat/leap/cmd/leaprc.ff99
----- Source of /usr/local/amber7/dat/leap/cmd/leaprc.ff99 done
Log file: ./leap.log
Loading parameters: /usr/local/amber7/dat/leap/parm/parm99.dat
Loading library: /usr/local/amber7/dat/leap/lib/all_nucleic94.lib
Loading library: /usr/local/amber7/dat/leap/lib/all_amino94.lib
Loading library: /usr/local/amber7/dat/leap/lib/all_aminoct94.lib
Loading library: /usr/local/amber7/dat/leap/lib/all_aminont94.lib
Loading library: /usr/local/amber7/dat/leap/lib/ions94.lib
Loading library: /usr/local/amber7/dat/leap/lib/solvents.lib

> loadamberparams frcmod.mod_phipsi.1
Could not open file frcmod.mod_phipsi.1: not found

> mod = loadamberparams frcmod.mod_phipsi.1
Could not open file frcmod.mod_phipsi.1: not found
> mod = loadamberparams /home/socr/b/bybaker/frcmod.mod_phipsi.1
Could not open file /home/socr/b/bybaker/frcmod.mod_phipsi.1: No such
file or directory
 

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