AMBER Archive (2009)

Subject: Re: [AMBER] ATP/GTP parameters

From: FyD (fyd_at_q4md-forcefieldtools.org)
Date: Mon Aug 31 2009 - 15:20:50 CDT

Dear Steve,

> I am looking for GTP parameters and looked in the achieves. I found
> that ATP and GTP had been deposited on the AMBER homepage site.
> However, looking through all the links, I cannot find them. Have
> they been incorporated into the newer force field/parameters? (I
> have AMBER 8 addition.)

If you are interested I can send you ATP, GTP force field libraries or
any co-factors you might be interested in deriving from XYP (X = A, C,
T, G, dA, dC, dT, dG. Y = M D T Q etc... An even more...).

This force field topology database has been developed in a single
R.E.D. job. Many co-factor analogs can be constructed since a building
block approach has been followed. See the list of cafactors built:
http://archive.ambermd.org/200812/0329.html

regards, Francois

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