AMBER Archive (2009)

Subject: RE: [AMBER] ATP/GTP parameters

From: Steve Seibold (
Date: Tue Sep 01 2009 - 06:42:09 CDT

Hi Francios

I would greatly appreciate that! Please do send the ATP, AMP, GTP, GMP and finally dATP and dGTP libraries.

Again, Thanks much.

Cheers, Steve

Steve Seibold
Research Asst. Professor
19B Chemistry Building
Michigan State University
East Lansing, MI 48824
Office 517-355-9715 ext 264
-----Original Message-----
From: [] On Behalf Of FyD
Sent: Monday, August 31, 2009 4:21 PM
Subject: Re: [AMBER] ATP/GTP parameters

Dear Steve,

> I am looking for GTP parameters and looked in the achieves. I found
> that ATP and GTP had been deposited on the AMBER homepage site.
> However, looking through all the links, I cannot find them. Have
> they been incorporated into the newer force field/parameters? (I
> have AMBER 8 addition.)

If you are interested I can send you ATP, GTP force field libraries or
any co-factors you might be interested in deriving from XYP (X = A, C,
T, G, dA, dC, dT, dG. Y = M D T Q etc... An even more...).

This force field topology database has been developed in a single
R.E.D. job. Many co-factor analogs can be constructed since a building
block approach has been followed. See the list of cafactors built:

regards, Francois

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