AMBER Archive (2009)

Subject: Re: [AMBER] ATP/GTP parameters

From: E.M. (
Date: Mon Aug 31 2009 - 15:50:09 CDT

Hello Francois, can you send those parameters to me as well?.
It would be nice if you post the link for all to see ^_^


Eduardo Mendez
FyD wrote:
> Dear Steve,
>> I am looking for GTP parameters and looked in the achieves. I found
>> that ATP and GTP had been deposited on the AMBER homepage site.
>> However, looking through all the links, I cannot find them. Have
>> they been incorporated into the newer force field/parameters? (I
>> have AMBER 8 addition.)
> If you are interested I can send you ATP, GTP force field libraries or
> any co-factors you might be interested in deriving from XYP (X = A, C,
> T, G, dA, dC, dT, dG. Y = M D T Q etc... An even more...).
> This force field topology database has been developed in a single
> R.E.D. job. Many co-factor analogs can be constructed since a building
> block approach has been followed. See the list of cafactors built:
> regards, Francois
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