AMBER Archive (2009)

Subject: Re: [AMBER] setting atomic radii for GB version 7

From: case (
Date: Thu Jun 25 2009 - 07:20:36 CDT

On Wed, Jun 24, 2009, Workalemhu Berhanu wrote:
> In setting up the prmtop file for GB version 7 which one should I use
> “set default PBradii mbondi2", or "set default PBradii bondi" . I am
> using amber 9 and I referred to the manual and it says you should use
> the bondi radii set.

I would recommend using what that manual suggests. Do you have a reason for
not following its advice?


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