AMBER Archive (2009)

Subject: [AMBER] setting atomic radii for GB version 7

From: Workalemhu Berhanu (
Date: Wed Jun 24 2009 - 22:12:55 CDT

Dear amber users

In setting up the prmtop file for GB version 7 which one should I use
“set default PBradii mbondi2", or "set default PBradii bondi" . I am
using amber 9 and I referred to the manual and it says you should use
the bondi radii set. Could you please help me?

With regards

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